Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g01273 ATGGGTGTTCCTAAGCAAAAATGGTCAGAAGAAGAGGAATCCGCACTTAAAGCTGGAGTTATCAAGCATGGGGTGGGTAAATGGCGTACGATCCTCAAGGATCCTGAATTTAACCATGTTTTATACCTTCGGTCAAATGTTGATCTAAAGGATAAATGGAGAAATTTGAGCGTGATGGCAAGTGGATGGGCTACGAGGGAGAAGCCAAAGGGAGCAATGAAAAGGGTGCATTATCAGACACCAAGACATGAGGACAACTCTATGGCTGTCACTCCTTTTTCTCTAAGCGATGATGAAATTGTTGATGTTCAGCCTCTTCAAGTTTCAAGAGATATGCTGCAAATTTCTGGCCCAAAAAGCTCTAGTATAAGGTTGGATAACCTTATAATGGAAGCTATATCTAGCTTGAATGAACTTGGTGGTTCTAATAAAACAACCATTGCTTCTTTTATTGAGGACCATTACTGGGCACCGGCTGACTTCAAAAAGCTGCTGTCAGCAAAACTGAAGTATCTTACATCTCGTGGAAAACTGATCAAGGTGAAGCGCAGGTATAGGATTGCACCTACTCCAGCATATTCAGACAGAGGAAGACACCCATCAACATTATTATTGGAAGGGAGGCAAAAAGGCTCTATGAAATTTTACAGGAATGAGAGCAATATCCCTACTAAGTCTGAGATCGATTTAGAATTAGAAAAAATAAGGTCCATGTCTGCACAAGAGGCAGCCGCATATGCTGCTCGAGCAGTTGCTGAAGCGGAAGCCCTCATGGCGGAGGCTGAAGAGGCAACAAAGGAGGCAGAGGCTGCAGAAGCGGAGGCAGATGCAATGGAAGCTTTTGTAGAAGCTGAAAGGAAAAGGCTGAAGGAGAAAAACACCCAAAGACGATGGATGCTCTTAAGAAGAAATCTACATTTGAAGAGGAGGCGGCTCTTAAAGCTGGAGTTGTCAAGCATGGGGCGGGCAAATGGCGTAAAATACTCAAGGATCCTAAGTTTAACTCATATTCACTCAAATGTCAATCTCAAGGATAAATGGAGAAATCTGAGTTCGATGGTGAATGAATGCTCCTCGAGGGAGAAGTCTAAGGTAGCAATCAGAAGGGTGCGTCATCAGGCACCAAAACAGGATGACATTTCGATGGCTGCAACTCCAGTTACTCCAAGTGATGATGAAATTGTTGATGTTCAGACTCTTCAAGTTTCAAGAGATATGCTGCAGATTCCTGGTCCGAAAAGGTCTATTGTAAGATTGGATAACCTTATAATGGATGCTATATCTAGCTTGAATGAGATTGTTGGTTCTAATAATACAACTATTGCTTCTTTCAGAGGTATAGGATTGCACCTACTCCAGCATATTCAGACAGAGGAAGCCACATATGCTGCTGGAGCAGTTGCTGAAGTGGAAGCCGACATAGCAGAAGCTGAAGAAGCAACGGAGGAGTCAGGCTGCAGAAGCGGATGCAGTGGAAGCTTTTGCAGAAGCTGCAATGAAAACACTGTAGGGGATAAATACCCAAACTCAGTAAATCCTGGCTTTTCCTTCCTTTGTAATACTAGAACTTAA 1572 0.4313 MGVPKQKWSEEEESALKAGVIKHGVGKWRTILKDPEFNHVLYLRSNVDLKDKWRNLSVMASGWATREKPKGAMKRVHYQTPRHEDNSMAVTPFSLSDDEIVDVQPLQVSRDMLQISGPKSSSIRLDNLIMEAISSLNELGGSNKTTIASFIEDHYWAPADFKKLLSAKLKYLTSRGKLIKVKRRYRIAPTPAYSDRGRHPSTLLLEGRQKGSMKFYRNESNIPTKSEIDLELEKIRSMSAQEAAAYAARAVAEAEALMAEAEEATKEAEAAEAEADAMEAFVEAERKRLKEKNTQRRWMLLRRNLHLKRRRLLKLELSSMGRANGVKYSRILSLTHIHSNVNLKDKWRNLSSMVNECSSREKSKVAIRRVRHQAPKQDDISMAATPVTPSDDEIVDVQTLQVSRDMLQIPGPKRSIVRLDNLIMDAISSLNEIVGSNNTTIASFRGIGLHLLQHIQTEEATYAAGAVAEVEADIAEAEEATEESGCRSGCSGSFCRSCNENTVGDKYPNSVNPGFSFLCNTRT 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g01273 523 Pfam linker histone H1 and H5 family 126 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mepo6g01273 523 Gene3D - 118 196 IPR036388 -
Mepo6g01273 523 FunFam Telomere repeat-binding factor 1 2 58 - -
Mepo6g01273 523 PANTHER SINGLE MYB HISTONE 4 336 444 IPR044597 GO:0003691
Mepo6g01273 523 SUPERFAMILY "Winged helix" DNA-binding domain 119 197 IPR036390 -
Mepo6g01273 523 SMART sant 4 59 IPR001005 -
Mepo6g01273 523 SUPERFAMILY Homeodomain-like 2 67 IPR009057 -
Mepo6g01273 523 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 121 189 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mepo6g01273 523 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Mepo6g01273 523 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Mepo6g01273 523 SMART h15plus2 119 184 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mepo6g01273 523 Gene3D - 8 82 - -
Mepo6g01273 523 CDD SANT_TRF 6 56 - -
Mepo6g01273 523 Coils Coil 244 288 - -
Mepo6g01273 523 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g01273 Mepo-Chr6 13840388 13851928 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g01273 336 444 Single Myb Histone (SMH) Gene Family AT1G49950 49.091 4.40e-22 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mepo6g01273 Linker_histone 2.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g01273 K09422 - gmx:778173 345.51