Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g01253 ATGGAAGAAGAGAATAAAGAAATGAAATCATTTAAGGATTTGGGTTTATCTGAGCAATTAGTTGAAGCTTGTGAAAAATTTGGTTGGAAGAATCCAAAAGAAATTCAAACAGAAGTGATTCCACTTGCACTACAAGGAAAAGATGTGATTGGAATTTCCAATACGGGTTCTGGTAAGACTGGAGCTTTTGTTCTTCCTATATTGCACGCCCTAGCACCGCAACCACACCTAAACAATTTCTTTGCTTGTGTAATGTCTCCCACAAGAGAGCTTGGCATTCAAATTGCTGAACAGTTTGAAGCTCTAGGTTCTGAAATTGGTGTTAAGTGTGCTGTGCTTGTTGGAGGGACTAGCATGGTACAGCAATCCATCGACATTGCAAAGCGACCTCATATTATTGTTGGGACGCCTGGACGACTCTTGGATCACCTAAAACACACCAAAGGATTTTCTCTTGGTAGATTAAAATACTTGGTCTTAGATGAGGCAGATAGGTTATTGAACGAGGACTTTGAGAAAGAACTTAATGAGATTTTAGGATTCATTCCTAGTAAGCGGAGAACATTTCTTTTTTCAGCTACAGGGACAGACAAGATTTATATACATCGTGTGGGAAGGACTGCTCGTGCTGGGCGCTCTGGTGTTGCCATTTCCCTTTTGAACCAATATGAACTGTCGTGGTTCAGACAGATAGAAGAACATATGGACAAGAAGCTACCATGTGACGAAGTTATGCTTTTGAAAGAGCGTGTTGATACGGCCAAAAGATTAGCAGAAAAGGAAATTAAGAAATCCGGTGAGAAGAAGAAATGGAGGGGAGAAGGAGATTTAGGTGAAGAGGATGAGAATATTGACAAGTACTTGGGACGTTTGAAGATCCACACCTCGCCTAAATACGAAACTTGGGAGCAACAAGACAAATTGCTCCTTGCATGGCTTCAAATTTCAATCTACAATTACTCACGACGTGCTTTGTCGTGTTATTGGATGCAATAA 996 0.4056 MEEENKEMKSFKDLGLSEQLVEACEKFGWKNPKEIQTEVIPLALQGKDVIGISNTGSGKTGAFVLPILHALAPQPHLNNFFACVMSPTRELGIQIAEQFEALGSEIGVKCAVLVGGTSMVQQSIDIAKRPHIIVGTPGRLLDHLKHTKGFSLGRLKYLVLDEADRLLNEDFEKELNEILGFIPSKRRTFLFSATGTDKIYIHRVGRTARAGRSGVAISLLNQYELSWFRQIEEHMDKKLPCDEVMLLKERVDTAKRLAEKEIKKSGEKKKWRGEGDLGEEDENIDKYLGRLKIHTSPKYETWEQQDKLLLAWLQISIYNYSRRALSCYWMQ 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g01253 331 SMART ultradead3 28 223 IPR014001 -
Mepo6g01253 331 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 245 IPR027417 -
Mepo6g01253 331 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 198 IPR027417 -
Mepo6g01253 331 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 9 37 IPR014014 GO:0003724
Mepo6g01253 331 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 197 268 - -
Mepo6g01253 331 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 40 199 IPR014001 -
Mepo6g01253 331 Pfam DEAD/DEAH box helicase 34 196 IPR011545 GO:0003676|GO:0005524
Mepo6g01253 331 Gene3D - 1 204 IPR027417 -
Mepo6g01253 331 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 159 167 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g01253 Mepo-Chr6 13637038 13641914 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g01253 11 199 Eukaryotic Initiation Factors Gene Family AT5G11200 35.417 1.17e-29 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g01253 K14777 - gmx:100775796 320.472