Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g01249 ATGTCGTCCCAATCTTGCCAGCCTTCGCAGCAGCCAGCCATCACCGACGAAGATGTCCTTAGTCGTACGCTCAAGGTTCGTGGTTTGCAGTACTGGATGGGCAAGAACTTTCTATTCAACTGCTTCTCTTTTACCGAAATGTTGACATCTGTGAAAGTGATTAAGAATGACGACACTGGTCCACTCGAAGGTGGTGATGGTTTTATGGAGTTTAAAACCCATGATTTTGCTGAGAGAGTGCTTAAAATGTACAACGGAGCCTATATGCCGGATGGTGAAAATAAATTCATCTTGGAGTGGCCAACTTTCATACCTGAAGACAATCATGGCAAATATGTCATTTCTGTTTCTAATTTGTCTGAGGATGTTAATGATTTTGTTCTTGAGAAGACTTTTAAGCGTTTTTACAACTTGGTGAAGGAGGCTAAAGTTGAAATCGACGAGATCACTGGAGTTTCTAAGGGTTATGGTTTTGTGAAATTTAATGACAAGTTTGAAAAGATGAGAGCCGTGAATGAGATGGAAGGGTTATTATGTTCAGAAAGACTCATGCAGATGAGTCCGGATCCTCTCCATTTCCTTTGA 585 0.412 MSSQSCQPSQQPAITDEDVLSRTLKVRGLQYWMGKNFLFNCFSFTEMLTSVKVIKNDDTGPLEGGDGFMEFKTHDFAERVLKMYNGAYMPDGENKFILEWPTFIPEDNHGKYVISVSNLSEDVNDFVLEKTFKRFYNLVKEAKVEIDEITGVSKGYGFVKFNDKFEKMRAVNEMEGLLCSERLMQMSPDPLHFL 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g01249 194 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 187 IPR000504 GO:0003723
Mepo6g01249 194 Gene3D - 1 103 IPR012677 -
Mepo6g01249 194 SMART rrm1_1 23 99 IPR000504 GO:0003723
Mepo6g01249 194 SMART rrm1_1 113 187 IPR000504 GO:0003723
Mepo6g01249 194 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 18 188 - -
Mepo6g01249 194 SUPERFAMILY RNA-binding domain, RBD 21 185 IPR035979 GO:0003676
Mepo6g01249 194 Gene3D - 112 187 IPR012677 -
Mepo6g01249 194 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 89 IPR000504 GO:0003723
Mepo6g01249 194 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 176 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g01249 Mepo-Chr6 13593722 13594396 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g01249 14 182 Eukaryotic Initiation Factors Gene Family AT1G22760 25.568 1.44e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g01249 - - gmx:100801562 174.096