Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g01222 ATGGACCTATCAGGTGATGAACAAGATAGTGACAACTCAAATGAATCAAAAAGAGTCTGTCGACATTCTGCTGATCAAATACTTAAGCTAGAAGAAATATTCAAAACGCTCACCCATCCAGATGATAACCAAAAATATGAAATAGCCCAAGAGCTTGAGCTTGAGCCACAACAAGTGAAATGGTGGTTTCAAAATAAAAGAGCACAGATTAAGGTTGAAAATGCACGTCTCAAAGAAAGGTATGAGATGATGGTAAAATCTCTTCCTAGGTCCATGGAGAAACAGGAAGTATCGTTAGAATTAACGATAGGTCTTCCTAAAAGCTTGACACGTGAAAGGACCTCCTTGAACCTAGATATAGGTTCAAGCTCAAAAAGTTCTTTAGAATTACAAAACCCTATGATGTTGGTGGCTGGACTTGCCGCCACGGAAGAGTTGCTTAAGCTTTTCCACGATGAATCCTTATGGGTTAAGTCTCAGCTTAATCGAAGACTTGTTCTTCAAAAAAACTATGAAGACGTCTTCCCTAGAGTTGACCACTTTAACCGCGCCAAAACACATGTTGAATCATCAAAAGATTCACAAATAGTGAAAATTGGAGCAACACATTTGGTGGACATGTTTCTGGATTCGGAAAAATGGGCAAATCTGTTCCCAACTATTATCAACAAAGCGGAGACCATCAAAGTGATTGAAAGAGGCTCCTCAGAAAATCAAAGTGGAGCTTTATTGTTGATGCACGAAGAGATGCATGTTCTTTCACCTTTAGTGAAACCAAGAGAATTTTACTTCCTTCGCTATTGTGTACAAGTTGAAGCTGGTATATGGGTGATTGCTGATGTTTCTTATGATTACTTGAAAGAGGATGGACCTCATTCTTCTTATTGGAGGTTTCCTTCTGGATGTTTGATTCAACAAATATCTGCTGAGACTTCCAAGGTTTCTTGGATTGAGCATGTGGAAGTGGATTTGAAGATTCAAACACATAGTATGTATAGAGATTTTGTCAACAATGCTATTGCATTTGGAGCCCAAAGATGGCTCATGGAACTTCAAAGAATTGGTGAAAGATGTAGTAGTGCTGCACTTGAATACATGCATTTTTATGACAATGGAGTAGTGACATTACCAGAAGGAAGGAGATGTGTAATGAAACTTGCACATCAAGTGGTTAAGGAGTTCAGTAAAAATTTAACAATGTCAAGCAAATCAGATTTACCACAATACTTTGCTGATGCTGATGATAGCGGGGTTAGGTTTTCGATTCGAAAAAATAGAAACTTATTTCTGTCAAAAGACCCATTCATTGTTATTGTTGCTAGCTCCGTTTTGATACCTCTCCCATCTCATATTGTTTTCGACTTCTTAAGAGATCCTGCAAGACGTTTTGAGTGGGATAAGTTTTGTGACGGAAATCCATGGCATGAAATTGCACACATCTCTACTGGAACTCATCCCAACCACTATGTATCAATTATTGAGCCTCTAGTGTCGCCTCCCAAAGATGGTGTGAAGATTATTCAAGAATGTTTCATAGATCCTTTGGGATCCTATGTTGTTTATTCTCCTGTAAACACACAAGAGTTGAATATGGCAATGAGTGGCCATGATTTATCAAATGTGTCACTTATAATTCCATCAGGCTTTTTCATCTCTGAAGATAGTAAATCTCTTTCAAAAGATAGTAAATCAAGAGGTTCATTGCTGACAGTGGCTTTTCAAATGCACATGCCTTGTCCTTTTATTGCAAATTTTGAATCTGCAGCTGATGCTTCAAATGCACTCATGACAACAGTAGTTAAAAGCATAAAACATGCTCTACTTAATTAG 1830 0.3792 MDLSGDEQDSDNSNESKRVCRHSADQILKLEEIFKTLTHPDDNQKYEIAQELELEPQQVKWWFQNKRAQIKVENARLKERYEMMVKSLPRSMEKQEVSLELTIGLPKSLTRERTSLNLDIGSSSKSSLELQNPMMLVAGLAATEELLKLFHDESLWVKSQLNRRLVLQKNYEDVFPRVDHFNRAKTHVESSKDSQIVKIGATHLVDMFLDSEKWANLFPTIINKAETIKVIERGSSENQSGALLLMHEEMHVLSPLVKPREFYFLRYCVQVEAGIWVIADVSYDYLKEDGPHSSYWRFPSGCLIQQISAETSKVSWIEHVEVDLKIQTHSMYRDFVNNAIAFGAQRWLMELQRIGERCSSAALEYMHFYDNGVVTLPEGRRCVMKLAHQVVKEFSKNLTMSSKSDLPQYFADADDSGVRFSIRKNRNLFLSKDPFIVIVASSVLIPLPSHIVFDFLRDPARRFEWDKFCDGNPWHEIAHISTGTHPNHYVSIIEPLVSPPKDGVKIIQECFIDPLGSYVVYSPVNTQELNMAMSGHDLSNVSLIIPSGFFISEDSKSLSKDSKSRGSLLTVAFQMHMPCPFIANFESAADASNALMTTVVKSIKHALLN 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g01222 609 Pfam START domain 140 356 IPR002913 GO:0008289
Mepo6g01222 609 CDD homeodomain 17 71 IPR001356 GO:0003677
Mepo6g01222 609 Pfam Homeodomain 21 71 IPR001356 GO:0003677
Mepo6g01222 609 Gene3D - 139 350 IPR023393 -
Mepo6g01222 609 SMART HOX_1 15 77 IPR001356 GO:0003677
Mepo6g01222 609 CDD START_ArGLABRA2_like 136 353 - -
Mepo6g01222 609 SUPERFAMILY Bet v1-like 141 358 - -
Mepo6g01222 609 ProSiteProfiles 'Homeobox' domain profile. 13 73 IPR001356 GO:0003677
Mepo6g01222 609 ProSiteProfiles START domain profile. 127 360 IPR002913 GO:0008289
Mepo6g01222 609 SUPERFAMILY Bet v1-like 376 578 - -
Mepo6g01222 609 SUPERFAMILY Homeodomain-like 9 73 IPR009057 -
Mepo6g01222 609 Gene3D - 3 86 - -
Mepo6g01222 609 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 15 607 IPR042160 -
Mepo6g01222 609 SMART START_1 136 357 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g01222 Mepo-Chr6 13277148 13281910 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g01222 1 607 Homeobox Transcription Factor Family AT1G17920 33.766 7.10e-111 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mepo6g01222 START 1.1e-30 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g01222 K09338 - mtr:11417442 550.821