Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g01220 ATGGATTACTCAATAGGAGGTGGCAGTGAGTCCGGTGATGAAGACATTGATAACTTTCGAGATGATGAAAAAAAACATTCCTACAAACGTCTTACCTCCGCTCAAACATCCATACTTGAAAATTTCATGAAGGAATGCCACCATCCAGACGAGGCAGAACGACGTCAATTGGCTGTGGAAGTTGGGCTTGAGCCCAAACAAATCAAGTTTTGGTTTCAGAACAAGAGAACTCTGTTGAAGTATGAGAAAGTGTCTAGCCTTCTTGCAAGTTACATGGAGAAAAAAATATCACTACCCCAGTTTGAGCAAGCTCTTAAATCTATAAAATCATTTTCACGAGACAGAGAACTTGAAATTCCACCAAACCAAACGTTTTATGAATGCTCAAGTCATGTGCATGGTAATCTAACTATGAGGGGAGGTGTGCTAGGGCACAACTCAGCACAAAACTATGATGCACAAAAGATAACTATGTCTCAAGTTGTAGCTGCTGCAATGGATGAATTGGTTAGGCTTGTGAGAGTTGATGCGCCTTTTTGGGTCAAAACTTCAAATACTCAAGATGGGTATACTCTTCATCGCGAAAGTTATGAGCATGTTTTTCCCAAGAACAATCACTTTAAAGGTGCGAATGTGTGCGATGAATCTTCCAAATATTCTGGATTAGTGAAGATTGGTGGCATAGAGTTGGTTGGCATGTTTCTCAACTCGGTCAAATGGACAAACTTGTTCCCTACAATTGTTACCAAAGCTGAAACTATCAAAGTGTTTGAAACCGGTACGCAAGGAAGTCGAGATGGAGCTTTATTACTGATGAATGAAGAAATGCATATTTTATCACCTCTAGTGAGGCCTCGCGAATTTAACATCATTCGCTACTGCAGAAAAGTTGATGCTGGAGTATGGGTGATAACTGATGTCTCATTTGACTCCTCTCGACCAAACACTGCACCTCTTTCTCGTGGTTGGAAACATCCCTCTGGATGCATCATTCGTGAAATGCCTCATGGGGGTTGTCTGGTCACTTGGGTTGAACATGTGGAAGTGGAAGATAAGATCCATACACACTACATGTATAGAGATCTTGTTGGCAACTATAATTTATATGGAGCTGAAAGCTGGATTAAGGAGCTTCAAAGAATGTGTGAGAGATCTTTAGGCTCTTATGTTGAAGCAATACCTGTTGAAGAAACTATAGGAGTGATCCAAACACTTGAAGGGAGGAATAGTGTGATAAAGCTTGCTCATAGAATGGTCAAGATGTTTTGTGAAAGTTTAACAATGCCTGGTCAATTGGAACTTAAGCATTTAACTGATCTTGATAGCATTGGTGGGGTTAGAGTCTCTCTTCGCAATACCACCGACGATGATACAAGCCAGCCAAATGGCACTGTTGTTACTGCTGCTACCACCCTTTGGTTCCCTCTGCCTGCTCAGAAAGTTTTTGAATTCCTCAAAGATCCTACAAAGCGATCACAGTGGGATGGTCTTTCTTGGGGAAATCCAATGCATGAAATTGCACACATTTCAAATGGACCCTATCATGGCAACTGCATTTCAATTATTAAGTCATTCATCCCTACTCAGAGGCAAATGGTGATTCTACAAGAAAGTTTCACATCTCCTGTGGGATCATATATTATATATGCTCCAATTGACAGAAAATCTATGGATGTGGCTTTAAGAGGTGAAGACTCTAAAGAGTTACCAATCCTTCCATATGGTTTTGTTGTCTGTTCAAAGAGCCAAGCAAATCTTAATGCATCATTTGGAGCATCTAACAGTATTGAAGATGGCTCGTTGCTAACTTTGGCAGCCCAAATTCTGAGCAGTAGTCCATATGCAATTGACCGAGTGCTTAATGTGGATTCTGTTAATCATATCAACACTCAATTGGCAACTACTATTCTAAATGTGAAGGATGCTCTTATGAGCTCTATTTAA 1944 0.4043 MDYSIGGGSESGDEDIDNFRDDEKKHSYKRLTSAQTSILENFMKECHHPDEAERRQLAVEVGLEPKQIKFWFQNKRTLLKYEKVSSLLASYMEKKISLPQFEQALKSIKSFSRDRELEIPPNQTFYECSSHVHGNLTMRGGVLGHNSAQNYDAQKITMSQVVAAAMDELVRLVRVDAPFWVKTSNTQDGYTLHRESYEHVFPKNNHFKGANVCDESSKYSGLVKIGGIELVGMFLNSVKWTNLFPTIVTKAETIKVFETGTQGSRDGALLLMNEEMHILSPLVRPREFNIIRYCRKVDAGVWVITDVSFDSSRPNTAPLSRGWKHPSGCIIREMPHGGCLVTWVEHVEVEDKIHTHYMYRDLVGNYNLYGAESWIKELQRMCERSLGSYVEAIPVEETIGVIQTLEGRNSVIKLAHRMVKMFCESLTMPGQLELKHLTDLDSIGGVRVSLRNTTDDDTSQPNGTVVTAATTLWFPLPAQKVFEFLKDPTKRSQWDGLSWGNPMHEIAHISNGPYHGNCISIIKSFIPTQRQMVILQESFTSPVGSYIIYAPIDRKSMDVALRGEDSKELPILPYGFVVCSKSQANLNASFGASNSIEDGSLLTLAAQILSSSPYAIDRVLNVDSVNHINTQLATTILNVKDALMSSI 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g01220 647 ProSiteProfiles START domain profile. 151 387 IPR002913 GO:0008289
Mepo6g01220 647 SMART HOX_1 24 86 IPR001356 GO:0003677
Mepo6g01220 647 SMART START_1 160 384 IPR002913 GO:0008289
Mepo6g01220 647 SUPERFAMILY Bet v1-like 407 559 - -
Mepo6g01220 647 Pfam START domain 162 384 IPR002913 GO:0008289
Mepo6g01220 647 CDD START_ArGLABRA2_like 155 383 - -
Mepo6g01220 647 Gene3D - 13 89 - -
Mepo6g01220 647 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 24 643 IPR042160 -
Mepo6g01220 647 SUPERFAMILY Bet v1-like 151 384 - -
Mepo6g01220 647 Pfam Homeodomain 27 78 IPR001356 GO:0003677
Mepo6g01220 647 Gene3D - 158 367 IPR023393 -
Mepo6g01220 647 MobiDBLite consensus disorder prediction 1 21 - -
Mepo6g01220 647 ProSiteProfiles 'Homeobox' domain profile. 22 82 IPR001356 GO:0003677
Mepo6g01220 647 CDD homeodomain 25 80 IPR001356 GO:0003677
Mepo6g01220 647 SUPERFAMILY Homeodomain-like 24 83 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g01220 Mepo-Chr6 13239501 13244936 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g01220 22 82 Homeobox Transcription Factor Family AT1G73360 57.377 1.20e-15 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mepo6g01220 START 3.2e-32 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g01220 K09338 - gmx:100795075 549.666