Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g01202 ATGTCATCAGTCAATAATCTTCGAATGGATCTTGGACGACCCGCGTCAGGTAGAAGAAGATTGAAAGATTTATTGCATCAGAAGGATAATCGTGTTTGTTCGGATTGTAATGCTCCAGATCCTAAATGGGCGTCTGCCAACATTGGGGTGTTTATATGCTTAAAATGTTGTGGTGTGCACAGAAGCCTTGGTACTCATATATCAAAGGTTTTGTCTGTGACATTGGATGACTGGTCAGATGATGAAGTAGATGCAATGATAGAAGTCGGGGGAAATGCTTCTGCTAATTCAATTTATGAGGCTTATATTCCTGAAGGTTATACAAAACCCAGACCAGATGCCAGTCATGAGCAGCGTGCAAAGTTTATACGGTCAAAGTATGAGTTGCAAGAATTTTTGAAGCCTAGTTTGCGCATTGTGTCCGGAAAAAGCAATCGATCAAGTTCTTCCAATAGTTTTATGGATAGTTTTAAAAGCACTAATTCAGAGAGAATGGAAGGTATGGTAGAATTCATTGGAATGTTGAAGGTGAAAGTGATTAAAGGCACAGATTTAGCCGTCCGGGATATAAAGTCAAGTGACCCATATGTTGTTTTGAACCTTGGCACACAGACTGTCCAGACAAGTGTAATGAGGAGTAATTTGAACCCAGTATGGAATGAGGAACATATGCTGTCTGTTCCCGAGCATTATGGACAGCTGAAATTGAAAGTATTTGATCATGACACTTTTTCTGCTGATGATATAATGGGAGAAGCGGACATTGATCTTCAGTCACTGATAACATCTGCCGTGGCATTTGGAGATGCTGGAATGTTTGGCGATATGCAGATTGGAAAATGGTTGAAATCTGACGACAATGCACTTATTGAGGATAGTGCAGTCAAAATTATCGATGGAAAGGTTAAACAAATGATGACACTCAAGCTCCAGAACGTTGAATCTGGAGAAATAGAGTTAGAACTTGAATGGATTTCTCTTGATCACTAG 990 0.399 MSSVNNLRMDLGRPASGRRRLKDLLHQKDNRVCSDCNAPDPKWASANIGVFICLKCCGVHRSLGTHISKVLSVTLDDWSDDEVDAMIEVGGNASANSIYEAYIPEGYTKPRPDASHEQRAKFIRSKYELQEFLKPSLRIVSGKSNRSSSSNSFMDSFKSTNSERMEGMVEFIGMLKVKVIKGTDLAVRDIKSSDPYVVLNLGTQTVQTSVMRSNLNPVWNEEHMLSVPEHYGQLKLKVFDHDTFSADDIMGEADIDLQSLITSAVAFGDAGMFGDMQIGKWLKSDDNALIEDSAVKIIDGKVKQMMTLKLQNVESGEIELELEWISLDH 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g01202 329 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 171 329 - -
Mepo6g01202 329 Pfam C2 domain 174 264 IPR000008 -
Mepo6g01202 329 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 171 326 IPR035892 -
Mepo6g01202 329 CDD ArfGap 21 127 - -
Mepo6g01202 329 SMART arf_gap_3 18 140 IPR001164 GO:0005096
Mepo6g01202 329 SMART C2_3c 174 269 IPR000008 -
Mepo6g01202 329 Gene3D Arf GTPase activating protein 8 138 IPR038508 -
Mepo6g01202 329 CDD C2_ArfGAP 172 316 - -
Mepo6g01202 329 PRINTS HIV Rev interacting protein signature 30 49 IPR001164 GO:0005096
Mepo6g01202 329 PRINTS HIV Rev interacting protein signature 49 66 IPR001164 GO:0005096
Mepo6g01202 329 PRINTS HIV Rev interacting protein signature 70 91 IPR001164 GO:0005096
Mepo6g01202 329 ProSiteProfiles C2 domain profile. 155 270 IPR000008 -
Mepo6g01202 329 Gene3D C2 domain 171 329 IPR035892 -
Mepo6g01202 329 Pfam Putative GTPase activating protein for Arf 19 134 IPR001164 GO:0005096
Mepo6g01202 329 FunFam Arf-GAP with dual PH domain-containing protein 1 13 141 - -
Mepo6g01202 329 ProSiteProfiles ARF GTPase-activating proteins domain profile. 18 132 IPR001164 GO:0005096
Mepo6g01202 329 SUPERFAMILY ArfGap/RecO-like zinc finger 18 135 IPR037278 -
Mepo6g01202 329 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 10 328 IPR044518 GO:0005096|GO:0005543
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g01202 Mepo-Chr6 13050171 13055399 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g01202 4 329 C2H2 Transcription Factor Family AT4G05330 70.238 5.18e-180 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g01202 K12486 - gmx:100790876 559.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g01202 6 13050171 13055399 Mepo6g01202 6 13050171 13055399 ECH