Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g01198 ATGACTTCTTCTACACATGATCCCACAGATAACGAGGCTGATGGACAGCAGCAGTCAGAATCACAGATGCAGCCTATATCTGCAAACGGAGTTCCTCACGCCGGTATTGATAATGCTCATATTGTTCAGTATGCAGCACCTCCACAGCTTGGCACGGGGCATGCTATGCCAAATTCCTGCTATTGCTTTGACTTTGAAGGCAATCATAGGGGAGAGCTTCCTAATACCATAAAAAAGGAGAGAAGAACACCACCACCTGCTTATCCATATCCGGATCCCTACTACAGAAGCATCTTTGCTCCCTATGATGCACAACCTTATCCGCCGCAACCCTACGGTGGACATCCAATGGCCAATCTTCAGTTAATGGGAATTCAGCATGCAGGAGTTCCTTTGCCAACTGATGCAGTTGAGGAGCCTGTGTTTGTCAATGCAAAACAGTATCATGGTATTTTAAGACGCAGGCAATCTCGTGCTAAAGCTGAATCAGAAAAGAAAGTTACACGGAATCGGAAGCCATACTTGCATGAATCGCGGCATTTGCACGCTTTGAAAAGAGCAAGAGGATGTGGAGGCCGGTTTCTGAATTCAAAGAAAGATGAGAATCAACAAGATGAGGTTGGATCAGCTGACAATTCACATTCCAATATCAATCTCAATTCTGATAGAAATGATCTTGCACAATCTGATAAACAACCTTGA 702 0.4444 MTSSTHDPTDNEADGQQQSESQMQPISANGVPHAGIDNAHIVQYAAPPQLGTGHAMPNSCYCFDFEGNHRGELPNTIKKERRTPPPAYPYPDPYYRSIFAPYDAQPYPPQPYGGHPMANLQLMGIQHAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESEKKVTRNRKPYLHESRHLHALKRARGCGGRFLNSKKDENQQDEVGSADNSHSNINLNSDRNDLAQSDKQP 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g01198 233 SMART cbf3 136 197 IPR001289 GO:0003700|GO:0006355
Mepo6g01198 233 MobiDBLite consensus disorder prediction 154 173 - -
Mepo6g01198 233 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 139 194 IPR001289 GO:0003700|GO:0006355
Mepo6g01198 233 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 9 225 IPR001289 GO:0003700|GO:0006355
Mepo6g01198 233 ProSiteProfiles NF-YA/HAP2 family profile. 137 197 IPR001289 GO:0003700|GO:0006355
Mepo6g01198 233 MobiDBLite consensus disorder prediction 193 207 - -
Mepo6g01198 233 ProSitePatterns NF-YA/HAP2 subunit signature. 142 162 IPR018362 GO:0003677|GO:0016602
Mepo6g01198 233 MobiDBLite consensus disorder prediction 191 233 - -
Mepo6g01198 233 Gene3D - 137 198 - -
Mepo6g01198 233 PRINTS CCAAT-binding transcription factor subunit B signature 171 194 IPR001289 GO:0003700|GO:0006355
Mepo6g01198 233 PRINTS CCAAT-binding transcription factor subunit B signature 140 162 IPR001289 GO:0003700|GO:0006355
Mepo6g01198 233 MobiDBLite consensus disorder prediction 1 33 - -
Mepo6g01198 233 MobiDBLite consensus disorder prediction 208 227 - -
Mepo6g01198 233 MobiDBLite consensus disorder prediction 1 28 - -
Mepo6g01198 233 MobiDBLite consensus disorder prediction 155 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g01198 Mepo-Chr6 13028388 13035644 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g01198 1 229 CCAAT-HAP2 Transcription Factor Family AT1G30500 47.186 1.39e-59 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Mepo6g01198 CBFB_NFYA 2.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g01198 K08064 - gmx:100809036 315.079