Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g01139 ATGGCTAATTCGGCTGAACCCTCGTCGTCTTTGAGCAATAATACATCATCGTCACACTTGTCAAATGGTAGTCACAACATATGCTCTAATGGCTCCGATCATGCTCGTAACCTCGAGGCTATAAGTTTGAATAAGCTGAGTTCTAATTTGGAGCAGCTTTTGATTGATTCTGATTATGATTATGGTGATGCTGATATCATTGTGGAGGGGATTCCGGTGAGAATTCATCGATGTATTCTAGGTTCTAGGAGTAAGTTTTTCCATGAAATATTTAAGAGGGGTAAAGATAAAGGATTGTCGAAGAATGAAGGGAAATTGAAGTATTGTTTGAGTGATTTGTTGCCTTATGGCAAAGTTGGTTATGAAGCTTTTCTTATATTCTTGAACTATGTATATAGTGGTAAACTTAAACCCTCTCCAATGGAGGTGTCTACATGTGTTGATAATGTTTGTGCTCATGATGCTTGCGGACCTGCAATTAATTTTGCTGTGGAGTTAATGTATGCCTCTTCCATTTTTCAAATACCAGAGCTGGTATCACTTTTTCAGAGACGTCTTCTTAACTTTGTAGGGAAGGCTCTTGTGGAAGATGTCATTTCAATCCTTATGGTTGCTTTCCATTGTCAATTGAATCAACTCGTCGCTCAATGTGTTGACAGGGTGGCACGATCGGACCTTGACCAGATCTCAATTGAGAAAGAGCTTCCCCATGAGCTCTCAGAAAAAGTTAAATTGCTCCGCCGCGACCTTCATCAGGATGATGAAAACGATGCTCCTGTAGTGGACACTTTGTCCCTAAAACGAATCACTAGAATTCACAAGGCATTGGACTCGGACGACGTCGAGCTTGTTAAACTTCTTTTAAACGAGTCAGACATTACCTTAGATGAAGCCGGTGCTCTTCACTATGCAGTAGCCCACTGTGACCCTAAGGTTGTTTCTGAAGTCCTTGGATTGGGTTTGGCTAATGTCAATCTTCGGAATTCTCGAGGGTATACAGTGCTTCACATTGCTGCCATGCGTAAGGAGCCTTCAATTATAGTATCTCTTCTTACGAAAGGGGCTTGTGCATCGGATTTGACTTTCGATGGTCAGAGTGCTGTTAGTATTTGTAGGAGGTTGACGAGGCCAAAGGATTATCACACAAAAACAGAACAAGGGAAAGAAACAAATAAAGACCGGATATGCATTGATGTTCTTGAAAGAGAAATGCGAAGGAATCCTTTGGCTACAGATCCCTCTGTGTCTTCCCACACAGTGGCTGATGATCTCCACATGAAGCTTTTGTACCTTGAGAACAGAGTGGCATTTGCAAGACTATTCTTCCCTTTGGAAGCCAAACTAGCCATGGACATTGCACGTGCGGAGACAACATCCGAGTTTGCTGGTCTTTCGGCATCAAAAGGTTCAAACGGAAACTTAAGGGAGGTTGATCTCAATGAAACTCCCATAATGCAAAACAAGAGACTTATTTCTAGGATGGAAGCCCTAATGAAAACAGTCGAAATGGGGCGGCGCTACTTTCCTCATTGCTCGGAAGTGCTCGACAAGTTCATGGAGGATGACCTACCTGATTTGTTTTACCTAGAGAAGGGCACCCAAGAAGAGCAAAGAGTCAAGAGGACGAGATTCGTTGAGCTTAAAGATGATGTCAACAAGGCTTTCAGCAAAGACAAAGCCGAGTTTAGTCGCGCTGGGATTTCATCTTCATCATCCTCTTCATCCCTTAGAGAGTCTGTATATTACAAGGCTAGAAAAATGTAA 1764 0.4235 MANSAEPSSSLSNNTSSSHLSNGSHNICSNGSDHARNLEAISLNKLSSNLEQLLIDSDYDYGDADIIVEGIPVRIHRCILGSRSKFFHEIFKRGKDKGLSKNEGKLKYCLSDLLPYGKVGYEAFLIFLNYVYSGKLKPSPMEVSTCVDNVCAHDACGPAINFAVELMYASSIFQIPELVSLFQRRLLNFVGKALVEDVISILMVAFHCQLNQLVAQCVDRVARSDLDQISIEKELPHELSEKVKLLRRDLHQDDENDAPVVDTLSLKRITRIHKALDSDDVELVKLLLNESDITLDEAGALHYAVAHCDPKVVSEVLGLGLANVNLRNSRGYTVLHIAAMRKEPSIIVSLLTKGACASDLTFDGQSAVSICRRLTRPKDYHTKTEQGKETNKDRICIDVLEREMRRNPLATDPSVSSHTVADDLHMKLLYLENRVAFARLFFPLEAKLAMDIARAETTSEFAGLSASKGSNGNLREVDLNETPIMQNKRLISRMEALMKTVEMGRRYFPHCSEVLDKFMEDDLPDLFYLEKGTQEEQRVKRTRFVELKDDVNKAFSKDKAEFSRAGISSSSSSSSLRESVYYKARKM 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g01139 587 Pfam NPR1/NIM1 like defence protein C terminal 372 574 IPR021094 -
Mepo6g01139 587 ProSiteProfiles Ankyrin repeat profile. 330 355 IPR002110 GO:0005515
Mepo6g01139 587 Gene3D Potassium Channel Kv1.1; Chain A 30 222 IPR011333 -
Mepo6g01139 587 SUPERFAMILY POZ domain 59 188 IPR011333 -
Mepo6g01139 587 ProSiteProfiles BTB domain profile. 62 140 IPR000210 GO:0005515
Mepo6g01139 587 FunFam regulatory protein NPR3-like 264 404 - -
Mepo6g01139 587 SMART BTB_4 62 190 IPR000210 GO:0005515
Mepo6g01139 587 FunFam Regulatory protein NPR3 36 222 - -
Mepo6g01139 587 PANTHER REGULATORY PROTEIN NPR3 15 578 IPR044292 GO:0009862|GO:2000022|GO:2000031
Mepo6g01139 587 MobiDBLite consensus disorder prediction 1 26 - -
Mepo6g01139 587 CDD BTB_POZ_NPR_plant 44 190 - -
Mepo6g01139 587 Pfam BTB/POZ domain 60 179 IPR000210 GO:0005515
Mepo6g01139 587 MobiDBLite consensus disorder prediction 566 587 - -
Mepo6g01139 587 Gene3D - 264 404 IPR036770 -
Mepo6g01139 587 ProSiteProfiles Ankyrin repeat region circular profile. 330 355 - -
Mepo6g01139 587 SMART ANK_2a 296 326 IPR002110 GO:0005515
Mepo6g01139 587 SMART ANK_2a 330 362 IPR002110 GO:0005515
Mepo6g01139 587 SMART ANK_2a 267 295 IPR002110 GO:0005515
Mepo6g01139 587 Pfam Domain of unknown function (DUF3420) 225 273 IPR024228 -
Mepo6g01139 587 Pfam Ankyrin repeats (many copies) 299 344 IPR002110 GO:0005515
Mepo6g01139 587 SUPERFAMILY Ankyrin repeat 262 373 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g01139 Mepo-Chr6 12246035 12250286 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Mepo6g01139 NPR1_like_C 8.6e-96 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g01139 K14508 - gmx:100217338 966.837
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g01139 6 12246035 12250286 Mepo6g01139 6 12246035 12250286 ECH