Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g01133 ATGGGGGATCAAGCTTTTTTAGATTATGAACCATTTGTTAATGTTGAGGAGGAAGAAGAAGAAGATGAGTTTTGCAGTTGCTGTGAAGATGCAGAAGAAAGAGATGAAGAAGAAAGGGAAGAAGAACAAGAAGAGTGGAAAGAAACTGAGGAGAAAGTGGTGGAAGGGATGAAGGAAGAACTTGATGAATTTTCAGTAAGAATGTTCTTTAAGGGGTTATCAATTACTGGTGTTGAAAATTCAACTTCAGGGTTTTCTGGAATTGGAGTGTTTATGGAAAGATCATCAAATCTTCCTCCTATAAGGGTGCAGAAAAGGCTTGATTTTTATGCTGAGGAGCCTATGGTTGATTACTTGGCACTCATGGATGGGTTGTTAGAAGCTTTGCAGAACAAGATCCGTAGGGTTTATGCTTTCACTGATTCTGAGTTGTTATATAAGATAACAGCTGAGAAAAATTTGGACATGCCGCTTTTGATGGCACTGAGAGAAAGGATTCTGGAACATGCCAATAATTTTGAAACTTTTGATCTGAAGCTTATACCAAGCATTGATCTTGAGCAGCCAATGCAGTTGGCCACAGTAGCTATGGGACTCGTCACTTTTCCAGTAAATGGCGAAAAATTGCTCGAGAATTGTTCTATTTGTTGCGACGACAAGCCAGTGCCAATGATGATTACCTTGAAATGTTCACACACATTCTGTTCACATTGCTTGAGGTCCTATGCTGACGGTAAACTACAATGTTGTCAAGTCCCTATAAGATGTCCTCAACCAGGGTGCAGATATTGTATCTCTACACCCGAGTGCAAATCTTTTCTTCCATTCTTCTCCTTCGAATCTCTCGAAAAAGCCCTTTCAGAAGCAAGTATTGCCCAATCAGAAAGATTTTATTGTCCATTTCCGAATTGTTCTGTTCTCCTTGATCCTTGTGAGTGTTTATCAGCAATGGACGGTTCATCTAGTCAGTCGGACAATTCTTGTATCGAGTGTCCTGTTTGTCAGAGGTTTATCTGCGTGAGCTGTGGTGTTCCTTGGCATTCTTCCATGAGCTGTGAAGAATTTCAGAGTTTGCCGGAAGAGGAGAGAGATGCTTCTGACATTACCTTGCATCGTCTTGCTCAGAATAAAAGGTGGAAGCGTTGTCAGCAGTGTCGTATAATGATTGAGCTTACTCAAGGTTGTTACCACATGACATGCCGGTGCGGTCATGAGTTCTGCTATTCTTGTGGTGCTGAGTACAGGGAAGGCCAACAAACATGTCAATGTGCATTTTGGGATGAAGACAGCCTGACAAACTCCGTTCAAGAATCAGAACAATGGTCATGGGAGACTTCTATGATCATGGATGCGTACTCAGATCAAGAACGGTCACAACTTGCGCTTATACAACGGTTCCTTGATGGAGGTTTTAGTCTCAGTGACCACAATCCCTATCAATCTCCTCCTCCTCAATGTACAGAATCATTTGTAGACCCTTTGAAGGATCTTCATCAACTTCCATGGCTAGAGAGATTTGTGTCTGTGATAAGTGACAACTATTATGAAGATTACATGCAATAA 1563 0.4139 MGDQAFLDYEPFVNVEEEEEEDEFCSCCEDAEERDEEEREEEQEEWKETEEKVVEGMKEELDEFSVRMFFKGLSITGVENSTSGFSGIGVFMERSSNLPPIRVQKRLDFYAEEPMVDYLALMDGLLEALQNKIRRVYAFTDSELLYKITAEKNLDMPLLMALRERILEHANNFETFDLKLIPSIDLEQPMQLATVAMGLVTFPVNGEKLLENCSICCDDKPVPMMITLKCSHTFCSHCLRSYADGKLQCCQVPIRCPQPGCRYCISTPECKSFLPFFSFESLEKALSEASIAQSERFYCPFPNCSVLLDPCECLSAMDGSSSQSDNSCIECPVCQRFICVSCGVPWHSSMSCEEFQSLPEEERDASDITLHRLAQNKRWKRCQQCRIMIELTQGCYHMTCRCGHEFCYSCGAEYREGQQTCQCAFWDEDSLTNSVQESEQWSWETSMIMDAYSDQERSQLALIQRFLDGGFSLSDHNPYQSPPPQCTESFVDPLKDLHQLPWLERFVSVISDNYYEDYMQ 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g01133 520 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 52 465 IPR031127 GO:0004842|GO:0016567
Mepo6g01133 520 Pfam Reverse transcriptase-like 83 182 IPR002156 GO:0003676|GO:0004523
Mepo6g01133 520 FunFam RBR-type E3 ubiquitin transferase 208 293 - -
Mepo6g01133 520 CDD BRcat_RBR_unk 294 355 - -
Mepo6g01133 520 Pfam IBR domain, a half RING-finger domain 372 421 IPR002867 GO:0008270
Mepo6g01133 520 Pfam IBR domain, a half RING-finger domain 283 352 IPR002867 GO:0008270
Mepo6g01133 520 ProSiteProfiles Zinc finger RING-type profile. 213 257 IPR001841 -
Mepo6g01133 520 SMART ibrneu5 280 352 IPR002867 GO:0008270
Mepo6g01133 520 SMART ibrneu5 362 421 IPR002867 GO:0008270
Mepo6g01133 520 FunFam RBR-type E3 ubiquitin transferase 350 465 - -
Mepo6g01133 520 MobiDBLite consensus disorder prediction 1 46 - -
Mepo6g01133 520 Coils Coil 32 52 - -
Mepo6g01133 520 CDD Rcat_RBR_unk 378 414 - -
Mepo6g01133 520 ProSiteProfiles TRIAD supradomain profile. 209 427 IPR044066 -
Mepo6g01133 520 FunFam RBR-type E3 ubiquitin transferase 66 200 - -
Mepo6g01133 520 SUPERFAMILY RING/U-box 365 429 - -
Mepo6g01133 520 Gene3D - 72 199 IPR036397 GO:0003676
Mepo6g01133 520 MobiDBLite consensus disorder prediction 12 46 - -
Mepo6g01133 520 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 210 294 IPR013083 -
Mepo6g01133 520 SUPERFAMILY RING/U-box 211 287 - -
Mepo6g01133 520 ProSitePatterns Zinc finger RING-type signature. 230 239 IPR017907 -
Mepo6g01133 520 Gene3D - 350 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g01133 Mepo-Chr6 12203703 12208739 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g01133 65 412 C3H Transcription Factor Family AT2G19610 26.446 3.13e-30 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g01133 - - tpra:123896818 944.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g01133 6 12203703 12208739 Mepo6g01133 6 12203703 12208739 ECH