Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g01056 ATGATTAATAACAATAAGGCTATGTCTCTCGTTGAAAATACATATGATCTACCAGGTGATTCACTAGCAGCTCCAACGATTCCTAATCCAACAAACGACATGGACAGGAGGATCAAAAAGCTGAAGCTGAAATATAGGACATATATGATTGAGCATGATGTTGACTGTGCTTCTGTTATGCTTCCCATGATGTTTAAGCATGATTTTGGGGACCAGATCAGGCAGTATGTGATTATGGTAGATCGTAAAGAAAATACATTTGAAGTATTGGTTGAGAGGAACAACCAAGGAATCTACCTCACGAGGGGATGGGGTGCGCTTTCTGATTTTTACAAGCTATCACTTGGTGCTTGGGTGACGATCGTTTATGTTGGTGAAGGAAGGTTCAACATAAGATTAATGGACAGGTTTGGCAAGAAGCTCCGTTGTCCCGAGTTTTCACCCCCAATGGAATTTTTGGTTGATAGGAATGCTATCCCTGTTACCCTGTTCAATGTTGTGCCTGGTCCATTTGCGCATGATGAGCTTAACTTTCAACACACATACAAGAAGAGGCTTGAATCGGATGAGATGAATGATGGAGTATTGGTACTTGCTTACGTTGGTTTTTCTATCATGTGTCTGGATACAAGCTCCACTTCCATAAAGTTGGTTGATGAACATGGGAATCGGTGGAATTGCACTATCCAGTTTGTACCGTGCAATGATGCGCGTTTTTTGATATGCTCCGGTTGGAACAAAATGGTCAAAGCAAGAGGACTTAAGGACGGTGATAGGGTTGTGATTGGAGCCCCTGGAGTTGGATCGAATGAAACTCTTTACTGTATTGTGATTCGTCGCTGA 843 0.4211 MINNNKAMSLVENTYDLPGDSLAAPTIPNPTNDMDRRIKKLKLKYRTYMIEHDVDCASVMLPMMFKHDFGDQIRQYVIMVDRKENTFEVLVERNNQGIYLTRGWGALSDFYKLSLGAWVTIVYVGEGRFNIRLMDRFGKKLRCPEFSPPMEFLVDRNAIPVTLFNVVPGPFAHDELNFQHTYKKRLESDEMNDGVLVLAYVGFSIMCLDTSSTSIKLVDEHGNRWNCTIQFVPCNDARFLICSGWNKMVKARGLKDGDRVVIGAPGVGSNETLYCIVIRR 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g01056 280 SUPERFAMILY DNA-binding pseudobarrel domain 45 135 IPR015300 -
Mepo6g01056 280 Gene3D - 39 137 IPR015300 -
Mepo6g01056 280 PANTHER B3 DOMAIN-CONTAINING 50 262 - -
Mepo6g01056 280 CDD B3_DNA 182 262 IPR003340 GO:0003677
Mepo6g01056 280 SUPERFAMILY DNA-binding pseudobarrel domain 203 265 IPR015300 -
Mepo6g01056 280 Pfam B3 DNA binding domain 210 277 IPR003340 GO:0003677
Mepo6g01056 280 Gene3D - 172 280 IPR015300 -
Mepo6g01056 280 ProSiteProfiles B3 DNA-binding domain profile. 215 280 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g01056 Mepo-Chr6 11168247 11172981 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g01056 45 140 REM Transcription Factor Family AT3G53310 26.042 4.60e-07 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mepo6g01056 B3 7.9e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g01056 - K02836 mtr:120577364 373.629