Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g01030 ATGGAGGTTTATGCCAAGAAAAAACCATCCAAGAAAGCTTTAGAGGAACTGGCAAGGAGACAGAAGAATGCTTTATTTGGAGATAATTCAGAATCTGCTGCTGCTGCTGCTGCTGCTGCTGCAGGTCAAGGAGCAGGTGAAGCAAAATGGGCTCTGTATCATTGCAATTACTGCAAGAAGGATATTACCGGAGTAATCCGTATTAAGTGTGCCGTGTGCCCAGATTTTGACTTATGTGTTGAGTGCTTTTCTGTTGGAGCTGAGCTGACACCCCACAAAAGCAATCATGATTACAGGGTCATGAATAAATTGTCTTTTCCTCTAATCTCCCCGGACTGGAACGCAGATGAAGAAATGTTGATTCTAGAGGGAATTGAAATGTATGGCCTGGAAAATTGGGCAGAAGTTGCTGAGCATGTTGGAACTAAGAACAAAGAGGCATGCATGGAACACTATAGGAAGTTTTACTTGAACTCTCCAGTCTTCCCTCTTCCGGACATGTCTCATGCTGTTGGGAGAAGCAGAGAAGAACTTCTTGCCACGGCGAAAGGGCAGGGTAACGACAAGAAAGGGTCGGATTCTGGGCTCTCGGTCAACACACATGCTGCAGCTGGTGCTAACAAAAAGGCATCCAATAAAGGCCGGGGAAAAGCTAGATTGCTGGAAGCTTCTCCAAAGGACGGAGATTTTGGAGGAAATAAGCCAAATTCCTCAAGAAATGAAGGCCGTACTTTGGTTGAAGTCAGTGGTTATAACCCGAAAAGACAGGAATTCGATCCTGAATATGATGATGATGCTGAGAAATTACTCGCTGATATGGAGTTTAATGACAATGACACTGAGGAGGAGATAGAGCTCAAACTTCGTATTATACGTATCTATAATAAAAGGCTTGATGAGAGAGAGCGCAGGAAGAAATTCATTCTTGAAAGAAATTTGCTATATGAAAATCCATTTGAGAAGGATTTAACACCCGAGGAAAAGGCAATATGCCGGAAATATGACATGTTCATGCGCTTGCATACTAAGGAAAAGCACGATGAATTACTCAAAACTGTTATCTCTGAACATAGATATCTGAAAAAAATTCAAGAGACTAAGGAAGCAATTGCTGCTGGTTGCCGCACTTCAGCTGAAGCAGATATATATCTGGCAAATAAGAGAAGAAGTGAAGCTGAAGGAAATGCTCGAAGGGCAAGAGAAAATACTCATGTGGTCCCGAACAATCACGGGGTTCCGAATGCATTGATGTCTCCAGACTCTGCTGGTACAAGACCTGCAAGGCCAGCTAGTTCAAGTGCTGTCAATGCAACAAAACACTCTGCAGCAGATTTACTTTCTGAAGTAGAGAAACGTTTGTGCTGCGAGTTAAGGTTGTCTCCAACTGTGTATCTGAAGATGCAAGAGGACTTGTCGGTACAAATGATTGCTGGAAGCGTCACTTCAAAGTCTGATGCTCATCAAATGTTCAAGAATATGGATACCATCAAAATTGACAGGGTGTATGATATGCTCATTAAGAAGGGTATTGGTTCCCCCTGA 1542 0.4293 MEVYAKKKPSKKALEELARRQKNALFGDNSESAAAAAAAAAGQGAGEAKWALYHCNYCKKDITGVIRIKCAVCPDFDLCVECFSVGAELTPHKSNHDYRVMNKLSFPLISPDWNADEEMLILEGIEMYGLENWAEVAEHVGTKNKEACMEHYRKFYLNSPVFPLPDMSHAVGRSREELLATAKGQGNDKKGSDSGLSVNTHAAAGANKKASNKGRGKARLLEASPKDGDFGGNKPNSSRNEGRTLVEVSGYNPKRQEFDPEYDDDAEKLLADMEFNDNDTEEEIELKLRIIRIYNKRLDERERRKKFILERNLLYENPFEKDLTPEEKAICRKYDMFMRLHTKEKHDELLKTVISEHRYLKKIQETKEAIAAGCRTSAEADIYLANKRRSEAEGNARRARENTHVVPNNHGVPNALMSPDSAGTRPARPASSSAVNATKHSAADLLSEVEKRLCCELRLSPTVYLKMQEDLSVQMIAGSVTSKSDAHQMFKNMDTIKIDRVYDMLIKKGIGSP 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g01030 513 SUPERFAMILY RING/U-box 52 116 - -
Mepo6g01030 513 Pfam Zinc finger, ZZ type 53 92 IPR000433 GO:0008270
Mepo6g01030 513 ProSiteProfiles Myb-like domain profile. 113 156 IPR001005 -
Mepo6g01030 513 SMART sant 109 158 IPR001005 -
Mepo6g01030 513 CDD SANT 113 155 IPR001005 -
Mepo6g01030 513 ProSitePatterns Zinc finger ZZ-type signature. 55 82 IPR000433 GO:0008270
Mepo6g01030 513 CDD ZZ_ADA2 53 101 IPR041983 -
Mepo6g01030 513 ProSiteProfiles Zinc finger ZZ-type profile. 50 106 IPR000433 GO:0008270
Mepo6g01030 513 Pfam Myb-like DNA-binding domain 112 154 IPR001005 -
Mepo6g01030 513 SMART zz_5 49 93 IPR000433 GO:0008270
Mepo6g01030 513 MobiDBLite consensus disorder prediction 187 206 - -
Mepo6g01030 513 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 113 160 IPR017930 -
Mepo6g01030 513 FunFam Transcriptional adapter 46 101 - -
Mepo6g01030 513 SUPERFAMILY Homeodomain-like 428 510 IPR009057 -
Mepo6g01030 513 MobiDBLite consensus disorder prediction 181 260 - -
Mepo6g01030 513 Gene3D - 106 158 - -
Mepo6g01030 513 FunFam Transcriptional adapter 2 106 158 - -
Mepo6g01030 513 MobiDBLite consensus disorder prediction 405 437 - -
Mepo6g01030 513 Gene3D - 427 511 IPR036388 -
Mepo6g01030 513 Gene3D - 47 103 IPR043145 -
Mepo6g01030 513 ProSiteProfiles SANT domain profile. 108 160 IPR017884 -
Mepo6g01030 513 PIRSF Txn_adaptor_ADA2 40 513 IPR016827 GO:0003713|GO:0006357|GO:0035065
Mepo6g01030 513 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 53 508 - -
Mepo6g01030 513 MobiDBLite consensus disorder prediction 231 245 - -
Mepo6g01030 513 ProSiteProfiles SWIRM domain profile. 426 513 IPR007526 GO:0005515
Mepo6g01030 513 SUPERFAMILY Homeodomain-like 105 159 IPR009057 -
Mepo6g01030 513 FunFam Transcriptional adapter 2 428 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g01030 Mepo-Chr6 10850128 10854335 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g01030 18 511 EF-hand Containing Proteins AT3G07740 40.951 1.71e-132 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mepo6g01030 Myb_DNA-binding 8.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g01030 K11314 - gmx:100811887 682.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g01030 6 10850128 10854335 Mepo6g01030 6 10850128 10854335 ECH