Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g01029 ATGGGTCGTTCTCGTGGTAATTTTCATCATAACGATGATGATCCAAGCCAAAGGTCAAGGAGAAAGAAGAATGCTGCAAGTGGAGATAATTCAGAATCTGGAGTTGCAGGTCAAGGAGCAGGTGAAGCGAAAAGGGCTTTGTATCATTGCAATTACTGTAATAAAGATATTACAGGAAAAATCCGTATCAAGTGTGCCATGTGCCCAGATTTTGACTTATGTATTGAGTGCTTTTCTGTTGGAGCTGAGGTGACACCCCACAAAAGCAATCATTCTTACAGGGTCATGGATAATTTGTCTTTCCCTCTCATCTGCCCAGACTGGAATGCAGATGATGAAATTTTGCTTCTAGAGGGAATAGAAATGTATGGCATGGGAAACTGGGCAGAAGTTGCTGAGCATGTTGGAACAAAGAACAAAGAAGCATGCATAGAACACTATAGGAATGTGTACTTGAACTCCCCGTTCTTCCCTCTTCCGGACATGTCTCATGTTGTTGGGAAAAACAGAAAAGAACTTCTTGCCATGGCGAAAGGGCAGGGTGACGACAAGAAAGGACTTCCGATGGGGGATCTTAGCATAAAGGAAGAATCACCCTTTTCTCCGTCTAGAGTCAAAATGGAAGATTCCAACAAATCTGGTTCTACAGGCCGTTTGACTTCCAATATGAATTCAGGGTCGGATTCTGGGCCCTCAGTCAACACACATGCTGCAGCTAGTGCTAACCAAAAGGCATCCAATAAAGGGCGGGGGAAAGGTGGTCCTGGAATCGTTAAAATGGAAGATTCTCCAATGGACAGAGATTTTGGAGGAAATAAGCCAAATTCCTCAAGAAATGAAGGCCCTTCTTTGGTTGAAATCAGTGGTTATAACCCGAAAAGACAGGAATTCGATCCTGAATATGATAATGATGCTGAGCAATTACTCGCCGAAATGGAGTTTAAGGACACTGACACTGAGGAGGAGCGAGAGATCAAACTTCGTGTGCTGCGTATTTATTCAAAAAGGCTTGATGAAAGAAAGCGCAGGAAGGAATTCATACTTGAAAGAAATTTGCTTTATCCAAATCCATTCGAGAAGGATTTAACACCCGAGGAAAAGTCAATATGCCGGAAATATGACATGTTCATGCGCTTTCATACTAAGGAAGAGCACGATGAATTACTCAGAACCGTTATCTCTGAACATAGGACTCTGAAAAGAATTCAAGAGCTTAAGGAAGCTCGTGCTGCTGGTTGCCGCAGTTCAGTTGAAGCAGATAGATATCTGGCGCATAAGAGAAGAAAGGAATCTGAAGAAAGTGCTTGTAGGGCAAGAGAAAGTGCTCATGTGGTCCCGAACAATCACGGGGTTCAAAATGCATTAATGTCTCCAGACTCTGCTGGTACCAGACCTGCAGGGTCAAGTTCTGTCAATGAAATGGATGCAACTGGATACTATGGAGCAGATTTACTTTCTGAAGCTGAGAAACGTTTGTGCTGCGAGTTAAGGTTGCCTCCAACCGTTTATCTGAAGATGCAAGAGGACCTATCGGTACAAATGATTGCTGGCAACGTCTCTTCAAAATCTGATGCTCATCAAATGTTGAAGAATGTGGATACCATCAAAATTGACAGGGTGTATGATATGCTCATCAAGAAGGGAATTGGTTCATTCTGA 1659 0.4292 MGRSRGNFHHNDDDPSQRSRRKKNAASGDNSESGVAGQGAGEAKRALYHCNYCNKDITGKIRIKCAMCPDFDLCIECFSVGAEVTPHKSNHSYRVMDNLSFPLICPDWNADDEILLLEGIEMYGMGNWAEVAEHVGTKNKEACIEHYRNVYLNSPFFPLPDMSHVVGKNRKELLAMAKGQGDDKKGLPMGDLSIKEESPFSPSRVKMEDSNKSGSTGRLTSNMNSGSDSGPSVNTHAAASANQKASNKGRGKGGPGIVKMEDSPMDRDFGGNKPNSSRNEGPSLVEISGYNPKRQEFDPEYDNDAEQLLAEMEFKDTDTEEEREIKLRVLRIYSKRLDERKRRKEFILERNLLYPNPFEKDLTPEEKSICRKYDMFMRFHTKEEHDELLRTVISEHRTLKRIQELKEARAAGCRSSVEADRYLAHKRRKESEESACRARESAHVVPNNHGVQNALMSPDSAGTRPAGSSSVNEMDATGYYGADLLSEAEKRLCCELRLPPTVYLKMQEDLSVQMIAGNVSSKSDAHQMLKNVDTIKIDRVYDMLIKKGIGSF 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g01029 552 CDD SANT 108 150 IPR001005 -
Mepo6g01029 552 ProSiteProfiles Myb-like domain profile. 108 151 IPR001005 -
Mepo6g01029 552 SUPERFAMILY RING/U-box 48 110 - -
Mepo6g01029 552 Gene3D - 466 550 IPR036388 -
Mepo6g01029 552 SMART sant 104 153 IPR001005 -
Mepo6g01029 552 MobiDBLite consensus disorder prediction 270 284 - -
Mepo6g01029 552 ProSiteProfiles SANT domain profile. 103 155 IPR017884 -
Mepo6g01029 552 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 48 547 - -
Mepo6g01029 552 MobiDBLite consensus disorder prediction 204 247 - -
Mepo6g01029 552 MobiDBLite consensus disorder prediction 177 191 - -
Mepo6g01029 552 FunFam Transcriptional adapter 41 96 - -
Mepo6g01029 552 ProSiteProfiles Zinc finger ZZ-type profile. 45 101 IPR000433 GO:0008270
Mepo6g01029 552 MobiDBLite consensus disorder prediction 1 38 - -
Mepo6g01029 552 CDD ZZ_ADA2 48 96 IPR041983 -
Mepo6g01029 552 FunFam Transcriptional adapter 2 101 153 - -
Mepo6g01029 552 SUPERFAMILY Homeodomain-like 101 154 IPR009057 -
Mepo6g01029 552 SUPERFAMILY Homeodomain-like 462 549 IPR009057 -
Mepo6g01029 552 MobiDBLite consensus disorder prediction 177 296 - -
Mepo6g01029 552 MobiDBLite consensus disorder prediction 1 27 - -
Mepo6g01029 552 MobiDBLite consensus disorder prediction 428 472 - -
Mepo6g01029 552 ProSiteProfiles SWIRM domain profile. 465 552 IPR007526 GO:0005515
Mepo6g01029 552 Pfam Myb-like DNA-binding domain 107 150 IPR001005 -
Mepo6g01029 552 Gene3D - 102 153 - -
Mepo6g01029 552 Pfam Zinc finger, ZZ type 47 88 IPR000433 GO:0008270
Mepo6g01029 552 Gene3D - 40 96 IPR043145 -
Mepo6g01029 552 MobiDBLite consensus disorder prediction 446 472 - -
Mepo6g01029 552 PIRSF Txn_adaptor_ADA2 35 551 IPR016827 GO:0003713|GO:0006357|GO:0035065
Mepo6g01029 552 ProSitePatterns Zinc finger ZZ-type signature. 50 77 IPR000433 GO:0008270
Mepo6g01029 552 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 155 IPR017930 -
Mepo6g01029 552 SMART zz_5 44 89 IPR000433 GO:0008270
Mepo6g01029 552 FunFam Transcriptional adapter 2 466 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g01029 Mepo-Chr6 10830613 10835674 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g01029 1 550 EF-hand Containing Proteins AT3G07740 45.439 1.15e-154 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mepo6g01029 Myb_DNA-binding 2.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g01029 K11314 - gmx:100811887 931.398