Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g01015 ATGGTTTCTCTAGAAGATTCTCGTTCGAATTCAAATCGTTTTCCATTACCAAAAACCTATCAATATCATTCATCTATTTCTTCAAAATCACAGCGTAACATAGGAAGATCCATGCGAACAAGAAGATCTAGTATCTTCGATGAAGATAACAGTAGTTGCACTTTCACCGAAAGATCCACCTGTGTATCGGAAAATCTCACCGATTCCGTCGTCGACCTCCGTCTCGGTGAACTCGCTTCCAAGAATCACAAATCCGGAAAATCTTCAACTTCTGAACAAGACTTTCTAGATCTTTCTCAAGCTTTTAGTGAATATGCTTATTCTGCTTGTAGTAGTGATATCTCCGGTGAGCTTCAGCGTTTGGCGACGTTGCCTTCGCCGGAGTGTGACGGTGGAGGTGGTGATGTGGTTGAAGTTGTTGAACCGGAGCCTTGCATGGGTTTTTTGCAAAGAGAGAATTTCTCAACGGAGATAATTGAGAGTATTTCGCCGGAGGATCTTCAACCAACGGTGAAGCTTTGTGTGGATGGTTTACAGTCTTCTTCAGTGGCTGTGAAACGTTCTGCAGCTGCGAAATTGAGGTTGCTTGCGAAGAATCGTGCTGATAATCGTGTTTTGATTGGTGAATCAGGTGCTGTACCTTTACTTGTTCCTTTGCTTCGTTGTAGTGATCCATGGACGCAAGAGCACGCGGTGACGGCGTTGTTGAATCTTTCTCTTCATGAAGATAACAAGAAACTGATATTTAATGCTGGAGCTGTGAAATCGTTGATTTATGTATTGAAAACAGGGACTGAAACGTCTAAGCAGAACGCGGCTTGTGCTCTTTTGAGTTTAGCGTTGGTGGAAGAGAATAAAAGCTCAATTGGAGCATCAGGGGCGATTCCACCATTGGTTTCGCTTCTGTTGAACGGTTCTAACAGAGGGAAGAAGGACGCTTTAACTACGCTTTACAAGCTTTGTTCTGTTAAGCAGAATAAGGAGAGAGCTGTGAGTGCTGGTGTGGTGAAGCCCTTGGTGGAGCTGGTGGCTGAGCAAGGGAATGGGATGATGGAGAAAGCAATGGTGGTGTTGAATAGCTTAGCGGGGTTCGATGAAGGGAAGGAAGCGATCGTGGAAGAAGGTGGTATCGCAGCTCTTGTTGAAGCTATTGAAGACGGGTCTGTGAAAGGAAAGGAATTTGCTGTTTTAACACTTTTGCAGCTTTGTGCTGAAAGTGTTACAAACAGAGGTTTGCTTGTTAGAGAGGGTGGGATTCCTCCTCTTGTCGCTCTTTCACAGAATGGAACTCCTCGAGCTAAGCATAAGGCTGAGACGCTTCTTCGATATTTGCGAGAATCAAGACAAGAAGCATCAACTTCAACTTCGTAG 1371 0.4442 MVSLEDSRSNSNRFPLPKTYQYHSSISSKSQRNIGRSMRTRRSSIFDEDNSSCTFTERSTCVSENLTDSVVDLRLGELASKNHKSGKSSTSEQDFLDLSQAFSEYAYSACSSDISGELQRLATLPSPECDGGGGDVVEVVEPEPCMGFLQRENFSTEIIESISPEDLQPTVKLCVDGLQSSSVAVKRSAAAKLRLLAKNRADNRVLIGESGAVPLLVPLLRCSDPWTQEHAVTALLNLSLHEDNKKLIFNAGAVKSLIYVLKTGTETSKQNAACALLSLALVEENKSSIGASGAIPPLVSLLLNGSNRGKKDALTTLYKLCSVKQNKERAVSAGVVKPLVELVAEQGNGMMEKAMVVLNSLAGFDEGKEAIVEEGGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVTNRGLLVREGGIPPLVALSQNGTPRAKHKAETLLRYLRESRQEASTSTS 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g01015 456 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 293 335 IPR000225 GO:0005515
Mepo6g01015 456 Pfam Armadillo/beta-catenin-like repeat 284 322 IPR000225 GO:0005515
Mepo6g01015 456 Pfam Armadillo/beta-catenin-like repeat 202 239 IPR000225 GO:0005515
Mepo6g01015 456 FunFam U-box domain-containing protein 4 310 451 - -
Mepo6g01015 456 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 334 376 IPR000225 GO:0005515
Mepo6g01015 456 SMART arm_5 406 446 IPR000225 GO:0005515
Mepo6g01015 456 SMART arm_5 282 322 IPR000225 GO:0005515
Mepo6g01015 456 SMART arm_5 364 404 IPR000225 GO:0005515
Mepo6g01015 456 SMART arm_5 200 240 IPR000225 GO:0005515
Mepo6g01015 456 SMART arm_5 241 281 IPR000225 GO:0005515
Mepo6g01015 456 MobiDBLite consensus disorder prediction 1 43 - -
Mepo6g01015 456 SUPERFAMILY ARM repeat 168 445 IPR016024 -
Mepo6g01015 456 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 211 253 IPR000225 GO:0005515
Mepo6g01015 456 FunFam U-box domain-containing protein 4 157 309 - -
Mepo6g01015 456 Gene3D - 311 453 IPR011989 -
Mepo6g01015 456 Gene3D - 153 310 IPR011989 -
Mepo6g01015 456 PANTHER U BOX DOMAIN-CONTAINING 124 445 - -
Mepo6g01015 456 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g01015 Mepo-Chr6 10704693 10708609 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g01015 35 449 U-box Gene Family AT2G23140 42.299 1.18e-86 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g01015 - - tpra:123898555 781.556