LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo6g01007	ATGTCACCGACCACCAAAACTCTCACGGCCAACCACGGCAAAAACCACTTCTCAAAACTCACATCCTCGTCTTCGAAGATGAAAAAGGTCTCAGAAACGAAATCATCGAAATTACAATTCTTCGTCCGCATGTGGAACAGTAAGACCTTAGTGATTCGTGCTTCCAGAGAAAAAACAGTTGAATATCTTCTCAAACAAATTTCATCTAAAACCAAAATTCCGATTGAACATCAACAATTAGTATACGAAGGAAAACAGCTTCAGCTAGAACAGAGTCTCCGCGAATGCGGCATCGAAAACGATTCAAATCTTCAATTGGTTGGACGCTTGAGGAGTATAGCGTGTCCTAGAGTATGGAAAGCCACACATTATATTGTTTCTTTAATTCTCAGGCTTTGTAGAGATGAATCGGTGATTGATGCGTCAATTATTGATGATCACTTTACAAATTACATCAATGATTCTGAATATTTTTCTGTTTTCATGTCTATGGACATTCCTTCACTGTTGGTAGCTCTTTATATGTCACCGTATGCAAATGCGAGCAGTGCTGGTTCCTTGATTAAGGATTTCGTGAAAATCTGTTTAGATTTGAAGGAAAAAAAGTTGCAGGGTGTTTACCTCGAAGTGTTATTGGAGTTTTGTGAATCGCTTAGAAGGGCAGGGTGTAGGTATCACGATCCTCTTTATGTTTTTTGCCGGGATAGTTTTGCATCTTTGCTGAAGCTTGTTGGTTGTGTTAGCTTTCAGAATCCTAAAGGAATGGTTGTGCTTCGGGGTGTTTTTTACTGTGTTCGTGAGCTTGCAGATGAGTTGTTGAGGTTTTTGGATTTGAGTATGAATTGTCCCACAGATGAGAGGCTTAAGTTCAATGTTGTTTTGGATTTTGTTAAATTCTCTGGCCATTTGAGGATGGGATTGGCCGAGCAGCAAGCAGCATCCGATGAATTTTTGAATTGTGCTATTTGTTACAAAGAGGATCCCTTGTTTGCAGGAGTAGTTGATCAACTTCATATTGTATTTATTAAGTTATTGAGCAAAATGGATGAGTGCCTTCAATTCATGGAGGATTGCTTGGTTAACAAGAAACATGGAAAAAGTGATGGGGCCGTTATCCATAATGGGTGGTCTCATTATATTATAATCCTGAAGGTATTGTATCACATATCTAAGCTCCATAGTGGTGCAAAAGAGATGTTTTGGGAAGTTTTGTTGCGTCAAAAAAGTATGCTATCTCATATGATTGTTCAGTACTCGAAGAAAACTGATGATCATCGGTGGGTTCTTGAGAACAGAAGTGTGACCGATTTTGAATGCAGGAGGTATTTAGCGATGATGTTGTTTCCCAACTTAAATAATGAATCGTTGGGATATGAGATGCTTATTGACAGGTCTCAGCTTTTGGCTGAATCTTTCGAGTACATATCACAAGCTAATTCTAAATCTTTGGAGGATGGTCTATTTATGGAATTCAGGAATGAGGAGGGTACAGGACCGGGTGTAATAAGGGAGTGGTTGGTTTTGGCGTGTCAGGAAATATTTAATCCGGAACATGCCCTTTTTGTGGCATGTCCAAATGACCGCAGGAGATTTTTTCCTAATGCTGCATCTAAGGTAAATCCTCTGCACCTAAAGTACTTCAGCTTCTCTGGACGTATGATTGCATTAGCTTTGAAGAATAAGGTGCATGTGGGTATTGTTTTTGATCGTGTGTTTTTCAAGCAATTGGCTGGAAACTATATTATTACTTTAGAAGATATTCGAGATGCAGATCCTATAATGTATAGTAGCTGCAAGCAAATATTGGAGATGGATGCTGATTATATTGATTCAGATGCATTAGGACTGACTTTTTCTATAGAGGTAGAGGAATTAGGACACAGGAAAGTGATTGAGCTCTGCTCTGGTGGGGATAGCATTGTCGTGGATAGTAAGAACAGGGAGAAATATGTTGATCTTCTTATACAGTATCGTTTTGTGAAATCCATATCTGAGCAGGTATCACATTTTGCCGAGGGTTTTGCTGATATTATATCTGGCTCAAGGTTAGAGTTCTTTCAATTTTTAGACCTTGAAGATCTTGATTGGATGCTGCATGGGAGTGAAAATACCATTTCTGTTGAAGATTGGAAGGCACATACAAAGTACCGTGGCTATAATAAGAATGATCGTCAGATATCTTGGTTTTGGAAGATTGTTGGAAGAATGTCAGCAGAGCAAAGGAAGGTTCTTCTGTTCTTTTGGACATCTGTGAAACATTTACCAGTTCAAGGTTTCCATGGTTTGGATTCCTGTATATTCATTTGCAAATCCAGCGAGCCTAACATTCACTTGCCCTCATCTCACACTTGTTTCTATGAGCTGTGCTTTCCCCCATATTCTTCTATGGCTATTATGCAAGATCGCCTTGGAATCATTACTCAAGAGCACGTCGGCTGCAGTTTTGGTGCTCCATAA	2457	0.3936	MSPTTKTLTANHGKNHFSKLTSSSSKMKKVSETKSSKLQFFVRMWNSKTLVIRASREKTVEYLLKQISSKTKIPIEHQQLVYEGKQLQLEQSLRECGIENDSNLQLVGRLRSIACPRVWKATHYIVSLILRLCRDESVIDASIIDDHFTNYINDSEYFSVFMSMDIPSLLVALYMSPYANASSAGSLIKDFVKICLDLKEKKLQGVYLEVLLEFCESLRRAGCRYHDPLYVFCRDSFASLLKLVGCVSFQNPKGMVVLRGVFYCVRELADELLRFLDLSMNCPTDERLKFNVVLDFVKFSGHLRMGLAEQQAASDEFLNCAICYKEDPLFAGVVDQLHIVFIKLLSKMDECLQFMEDCLVNKKHGKSDGAVIHNGWSHYIIILKVLYHISKLHSGAKEMFWEVLLRQKSMLSHMIVQYSKKTDDHRWVLENRSVTDFECRRYLAMMLFPNLNNESLGYEMLIDRSQLLAESFEYISQANSKSLEDGLFMEFRNEEGTGPGVIREWLVLACQEIFNPEHALFVACPNDRRRFFPNAASKVNPLHLKYFSFSGRMIALALKNKVHVGIVFDRVFFKQLAGNYIITLEDIRDADPIMYSSCKQILEMDADYIDSDALGLTFSIEVEELGHRKVIELCSGGDSIVVDSKNREKYVDLLIQYRFVKSISEQVSHFAEGFADIISGSRLEFFQFLDLEDLDWMLHGSENTISVEDWKAHTKYRGYNKNDRQISWFWKIVGRMSAEQRKVLLFFWTSVKHLPVQGFHGLDSCIFICKSSEPNIHLPSSHTCFYELCFPPYSSMAIMQDRLGIITQEHVGCSFGAP	818

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mepo6g01007	818	PRINTS	Ubiquitin signature	90	111	IPR019956	-
	Mepo6g01007	818	PRINTS	Ubiquitin signature	69	89	IPR019956	-
	Mepo6g01007	818	PRINTS	Ubiquitin signature	48	68	IPR019956	-
	Mepo6g01007	818	CDD	HECTc	459	816	IPR000569	GO:0004842
	Mepo6g01007	818	ProSiteProfiles	Ubiquitin domain profile.	38	112	IPR000626	GO:0005515
	Mepo6g01007	818	Gene3D	Hect, E3 ligase catalytic domain	701	816	-	-
	Mepo6g01007	818	Gene3D	-	30	118	-	-
	Mepo6g01007	818	SMART	hect_3	477	816	IPR000569	GO:0004842
	Mepo6g01007	818	Gene3D	Hect, E3 ligase catalytic domains	461	693	-	-
	Mepo6g01007	818	FunFam	E3 ubiquitin-protein ligase UPL5	702	817	-	-
	Mepo6g01007	818	Pfam	HECT-domain (ubiquitin-transferase)	508	810	IPR000569	GO:0004842
	Mepo6g01007	818	ProSiteProfiles	HECT domain profile.	479	818	IPR000569	GO:0004842
	Mepo6g01007	818	PANTHER	HECT DOMAIN UBIQUITIN-PROTEIN LIGASE	39	816	-	-
	Mepo6g01007	818	Pfam	Ubiquitin family	41	111	IPR000626	GO:0005515
	Mepo6g01007	818	SUPERFAMILY	Ubiquitin-like	26	111	IPR029071	-
	Mepo6g01007	818	MobiDBLite	consensus disorder prediction	1	28	-	-
	Mepo6g01007	818	SUPERFAMILY	Hect, E3 ligase catalytic domain	458	803	IPR035983	GO:0004842
	Mepo6g01007	818	SMART	ubq_7	38	109	IPR000626	GO:0005515
	Mepo6g01007	818	Gene3D	Hect, E3 ligase catalytic domain	579	662	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo6g01007	Mepo-Chr6	10572188	10577235	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo6g01007	38	111	Cytoplasmic Ribosomal Protein Gene Family	AT3G52590	33.784	9.64e-09	52.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo6g01007	-		-	mtr:11406418	1151.35