Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g01006 ATGGCGCTAACGTCAATGTCATCGATCATTAAAACCCTCATCGGCGGTTGTTTCTATGGCGGCACCGCCGACCACCACAACAACCACTTCCAGGAACTCAAATTCAACGACACCAAAACGTCTTCGTCAAGGTTACAATTCTTCGTTCGCATGATGTGGAACTGTAAAACCATAGTTATCCATGCTTCAAGAGAAGACACAGTGGAATCTATTCTCCAACAAATTTCATCCAAAACCAAAATTCCTATTGAATATCAACGATTGATCTACAATGGAAAACAGCTTCAGCAACAACGGAGTCTCGGCGAATGCGGCATCGAAAACGACGCCAATCTTCAATTGGTTGGTCAATTGAAGAGTATAGGGCGTTCTGTAGTGTGGAAAACTACAGATGATATTGTTTCAATGATTCTCAAACTCTGTAGAGGTGAATCAGTGATTGGTGCTTCCGTAATTTTTTGTAAACACTTTACAAAGTATATGCATAATTCCTTCCATGTTATCAAGATTATGAAAATTCCCTCTCTGTTGGTAGCTCTTTATAAGTCTCCTTACGCAAGTAATGCGACCATTGCTGATTCGTCTATTAGGAATTTCGTGAAAGTTTGTTTAGAATTGAAGTGCAAAACGTTGCAGGGGGCTTACCTTGAAGTGTTATTAGAGTTTTGTGAATTGCTTAGAGGTGTAGGGTGTAAGTGTGATGATCCTTTGTATGTTTGTTGTCGGGATGGTTTTGCGGAATTGTTGATTCTTGTTGGTGGTGTTCCAATTACGAATCTTAAAATGAAGGTTTTGCTTCGGGGTGTTATTGACTGTATCCGCGAGATCGTAGATGAGTTGTTGAGGTTTTTGGATTTGAGTATGAATTGTCCCACTAAAATGAGGCCTTCGTACAAAGTTGTTTTGGATTTTGTTAAATTCTGTTGCGCTTTGAGGATGGGATTCGCCAATGAGCAAGCAACATCCGATGAATCTTTGAATTGTGATATTTGCTATGAGGACGATCCCTTGTTTTCAGGAGTACCTGATCAACTTCATATTGTATTTATTAAGTTATTGAGCAAAATGGATGAGTGCCTTCAGGTCATGGAAGATTGCTTGGTTAACAAGAAACGTGGAAATGGGGAATGGGATGTTATCCATAATTGTTATCTTATTATTCTTAAGGAATTGTTTCACATCTCCAAGTTCTACAGCGGTGCACAAGAACAGTTTTGGGGACTTTTCTTGCGTCGAAAAAATGTGCTACCTCATATAATTGTTCGGTACGTGAAGGAAACTGATGATCATCGGTGGCTTCTTGAGAACAGAATTGTGACTGATTTTGAATCCAGGAGGCATTTGGCGATGATGCTATTCCCTGACTTAAAAGATAAGATATTGGGATATGAGATGCTTATTGACAGGTCTCAGGTTTTGGCTGAATCTTTTGAGTACATATTACGAGCTATGCCTAGATCACTGCAGGGTGATCTATTTATGGCATTCAAGAATGAGAAAGCTACAGGACCGGGTGTACTGAGGGAGTGGTTTGTTTTGGTGTGTCAGGAAATATTTAATCCAAAAAATGCTCTTTTTGTGGCATGTCCAAATGACCACAGGAGATTTTTTCCTAATACTGCATCTATGGTAAATGCTCTGCACCTAAAGTACTTCATCTTCTCTGGACGTATTATTGCATTAGCTTTGAAGAAGAAAGTGCACGTGGGTATTGTTTTTGATCGTGTATTTTTCAAGCAATTGGCTGGAAACTATATTATTACTTTAGAAGATATTCGGGATGCAGACCCTATAATGTATAGTAGCTGCAAGCAAATATTGGAGATGGATGCTGATTATATTGATTCAGATGCATTAGGACTGACATTTTCTATAGAGGTAGAGGAATTAGGACACAGGGAAGTGATTGAGCTCTGCCCTGGTGGAGAAAGCCTTGTTGTGGATAGTAAGAACAGGGAGAAGTATGTTCATCTTCTTATACAGAGTCGTTTTGTGACATCCATATCTAAGCAGATATCACATTTTGCCCAAGGTTTTGGTGATATTATATCTGGCTCAAGTCTAGAGTTCTTCCAATTTTTAGACCTTGAAGATTTTGATTGGATGCTGCATGGGAGTGAAAATGACATTTCTGTTGAAGATTGGAAGGCACATACCAAGTATCGTGGCTATAAAGAGAACGATCGTCAGATATCTTGGTTTTGGGAGATCGTTGGAAGAATGTCGGCGGAGCAAAAGAAGGTTCTTCTGTTCTTTTGGACATCTGTGAAACATTTACCAGTTGAAGGTTTCCAGGGCTTGAATTCCCGTCTGTTAATTTGCAAATCCAGTCAACCTGATAATCACCTGCCGTCATCTCACACATGTTTTTACAAGCTGTCCTTTCCCGCGTATTCTTCTATGGCTATCATGCAAGATCGCCTTGGAATCATCACTCAAGAACACATCAGCTGCAGTTTTGGTACTCGGTAA 2472 0.3981 MALTSMSSIIKTLIGGCFYGGTADHHNNHFQELKFNDTKTSSSRLQFFVRMMWNCKTIVIHASREDTVESILQQISSKTKIPIEYQRLIYNGKQLQQQRSLGECGIENDANLQLVGQLKSIGRSVVWKTTDDIVSMILKLCRGESVIGASVIFCKHFTKYMHNSFHVIKIMKIPSLLVALYKSPYASNATIADSSIRNFVKVCLELKCKTLQGAYLEVLLEFCELLRGVGCKCDDPLYVCCRDGFAELLILVGGVPITNLKMKVLLRGVIDCIREIVDELLRFLDLSMNCPTKMRPSYKVVLDFVKFCCALRMGFANEQATSDESLNCDICYEDDPLFSGVPDQLHIVFIKLLSKMDECLQVMEDCLVNKKRGNGEWDVIHNCYLIILKELFHISKFYSGAQEQFWGLFLRRKNVLPHIIVRYVKETDDHRWLLENRIVTDFESRRHLAMMLFPDLKDKILGYEMLIDRSQVLAESFEYILRAMPRSLQGDLFMAFKNEKATGPGVLREWFVLVCQEIFNPKNALFVACPNDHRRFFPNTASMVNALHLKYFIFSGRIIALALKKKVHVGIVFDRVFFKQLAGNYIITLEDIRDADPIMYSSCKQILEMDADYIDSDALGLTFSIEVEELGHREVIELCPGGESLVVDSKNREKYVHLLIQSRFVTSISKQISHFAQGFGDIISGSSLEFFQFLDLEDFDWMLHGSENDISVEDWKAHTKYRGYKENDRQISWFWEIVGRMSAEQKKVLLFFWTSVKHLPVEGFQGLNSRLLICKSSQPDNHLPSSHTCFYKLSFPAYSSMAIMQDRLGIITQEHISCSFGTR 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g01006 823 SMART ubq_7 45 117 IPR000626 GO:0005515
Mepo6g01006 823 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 333 821 - -
Mepo6g01006 823 PRINTS Ubiquitin signature 98 119 IPR019956 -
Mepo6g01006 823 PRINTS Ubiquitin signature 56 76 IPR019956 -
Mepo6g01006 823 PRINTS Ubiquitin signature 77 97 IPR019956 -
Mepo6g01006 823 Pfam Ubiquitin family 48 117 IPR000626 GO:0005515
Mepo6g01006 823 CDD HECTc 464 821 IPR000569 GO:0004842
Mepo6g01006 823 Gene3D Hect, E3 ligase catalytic domain 584 667 - -
Mepo6g01006 823 FunFam E3 ubiquitin-protein ligase UPL5 707 822 - -
Mepo6g01006 823 SMART hect_3 475 821 IPR000569 GO:0004842
Mepo6g01006 823 Gene3D Hect, E3 ligase catalytic domain 706 822 - -
Mepo6g01006 823 ProSiteProfiles HECT domain profile. 505 823 IPR000569 GO:0004842
Mepo6g01006 823 SUPERFAMILY Ubiquitin-like 40 118 IPR029071 -
Mepo6g01006 823 Gene3D Hect, E3 ligase catalytic domains 466 697 - -
Mepo6g01006 823 SUPERFAMILY Hect, E3 ligase catalytic domain 463 808 IPR035983 GO:0004842
Mepo6g01006 823 Pfam HECT-domain (ubiquitin-transferase) 513 815 IPR000569 GO:0004842
Mepo6g01006 823 ProSiteProfiles Ubiquitin domain profile. 45 120 IPR000626 GO:0005515
Mepo6g01006 823 Gene3D - 37 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g01006 Mepo-Chr6 10557993 10562683 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g01006 45 119 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 36.000 1.39e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g01006 - - mtr:11406418 1369.76