Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g01005 ATGTCATCAATTACTAAAACTATCACCGGCGGTTGTTTCCACCAACCGAGCATCAATGACGCCACCGCCGACCACCACAACAACCATTCCCCGGAGCTCAAATTCAACGACACCAAAACGACGTCGTCACAGTTGCAATTCTTCGTTCGCATGATGTGGAAATGTAACACCATAGTCATCCACGCTTCAAGAGAAGACACGGTGGAATCTATTCTCCAACAAATTTCATCCAAAACCAAAATTCCTATTGAATATCAACGATTGATCTACAATGGAAAACAGCTTCAGCAACAACGGAGTCTCGGCGAATGCGGCATCGAAAACGACGCCAATCTTCAATTGGTTGGTCAATTGAGGAGTATAGGCCGTTCTGTAGTATGGAATTCTGCAGATGATATTGTTTCAATGATTCTCAACCTCTGTAGAGGCGAAACGCTGAATGGTGCTTCCATGATTATTCATAATCACTTTGCAAAGTATATGAATAATTTTGAATATTTTTATGTTTTCAAGTTAATGAAAATTCCTTCTCTGTTGGTAGCTCTTTATATGTCCCCGTTTGCACGTAACAAGAATATTGCTGATTTCTCTATTGAAAGTTTCATTGAGATTTGTTTAAATTTGAAGTGCAAAAAGTTGCAGGGTTCTTACCTTGAAATATTGTTGGAGTTTTGTGAATTGCTTAGAGGTGTAGGGTGTAAGTGTGATGATCCTGTGTATGTTTCTTGTCGGGATGGTTTTGGAAATTTGCTGACACTCGTTAGTGGTGTCCCCATTAACAATCCTAATATGAAGGTTTTGCTTCGGGGTGTTTTTGATTGTGTTCACGAGATCGCAGATGAGTTGTTGATGTATTTGGATTCCAGTATGAATTGTGACACTGCCGAAGGGCTTTCGTACAAAGTTGTTTTGGATTTTGTTAAATTTTGTGGCCCTTTGAGGATGGAATTCGCCGAGGAGCAAGCAACATCTGATGAATCTTTGAATTGTGGTGTTTGCTATGAGGAGGATTCTTTGTTTTCAGGAGTAGTTGATCAACTTCATATTGTATTTATTAAGTTATTGAGCAAAATGGACGAGTGCCTTCAAGTCATGGAAGATTGCTTGGTTAACAAGGAACAAGGAAAAGGGGATGTTATCCATAATGGTTGCTCTCATTATCTTATAATTCTTAAGGAATTGTGTCACATCTCTAAGTTCTATAGCGGTGCACAAGAAAAGTTTTGGGGACTTTTCTTGCATCGAAAAAATGTGCTACCTCATATGATTGTTCGGCATGTGAAGAAAACCGATGATCATCGATGGCTTCTTGAGAACAAAATTGTGACCGATTTTGAATCCAGGAGGCATTTGGCGTTGATGCTATTCCCTGACTCAAAAGATGAAATATCGGGATATGAGATGCTTATTGACAGGTCTCAGGTTTTGGCTGAATCTTTTGAGTACATGTCTCGAGCTAAGGCTAAATCTCTGCAGGGTGGAATATTTATGGCATTCAAGAATGAGAAAGCTACAGGACCGGGTGTACTAAGGGAGTGGTTTGTTTTGGTGTGTCGGGAAATATTTAATCCAAAAAATGCTCTTTTTGTGGCATGTCCAAATGACCACAGGAGGTTTTTTCCTAATGCTGCATCTAAGGTAAATTCTCTGCACCTAAAGTACTTCATCGTCTCTGGACGTATTATTGCATTAGCTTTGAAGAAGAAGGTGCATGTGGGTATTGTTTTTGATCGTGTGTTTTTCAAGCAATTGGCTGGAAACTATATTATTACTTTAGAAGATATTCGAGATGCAGATCCTATAATGTATAGTAGCTGCAAGCAAATATTGGAGATGGATGCTGATTATATTGATTCAGATGCATTAGGACTGACATTTTCTACAGAGGTAGAGGAATTAGGACACAGGGAATTGATTGAGCTCTGCCCTGGTGGAGAAAGCCTTGTTGTGGATAGTAAGAACAGGGAGAAGTATGTTCATCTTCTTATACATAATCGTTTTGTGACATCTATATCTAAGCAGGTATCACATTTTGCCCAAGGTTTTGCTGATATTATATCTTGCTCAAGGCTGGAGTTCTTTCAATTTTTAGACCATGAAGATTTTGATTGGATGCTGCATGGGAGTGAGAATGCCATTTCTGTTGAAGATTGGAAGGCACATACCAATTATCATGGCTATAAAGAGACTGATCATCAGATATCTTGGTTTTGGAAGATCGTCGGGAGAATGTCAGCAGAGCAAAAGAAAGTTCTTTTGTTCTTTTGGACATCTGTGAAACATTTACCAGTTGAAGGTTTTTGTGGCTTGAGTTCCACTCTATTAATTTCCAAATCCAGCAAACCTGATAATCACTTGCCCTCATCTCACACATGCTTTTACAAGCTGTGCTTTCCCCCATATTCTTCTATGGCTATCATGCAAGATCGCCTTGGAATCATCACTCAAGAGTACATCAGCTGCAGTTTCGGTACTCCATAA 2481 0.3942 MSSITKTITGGCFHQPSINDATADHHNNHSPELKFNDTKTTSSQLQFFVRMMWKCNTIVIHASREDTVESILQQISSKTKIPIEYQRLIYNGKQLQQQRSLGECGIENDANLQLVGQLRSIGRSVVWNSADDIVSMILNLCRGETLNGASMIIHNHFAKYMNNFEYFYVFKLMKIPSLLVALYMSPFARNKNIADFSIESFIEICLNLKCKKLQGSYLEILLEFCELLRGVGCKCDDPVYVSCRDGFGNLLTLVSGVPINNPNMKVLLRGVFDCVHEIADELLMYLDSSMNCDTAEGLSYKVVLDFVKFCGPLRMEFAEEQATSDESLNCGVCYEEDSLFSGVVDQLHIVFIKLLSKMDECLQVMEDCLVNKEQGKGDVIHNGCSHYLIILKELCHISKFYSGAQEKFWGLFLHRKNVLPHMIVRHVKKTDDHRWLLENKIVTDFESRRHLALMLFPDSKDEISGYEMLIDRSQVLAESFEYMSRAKAKSLQGGIFMAFKNEKATGPGVLREWFVLVCREIFNPKNALFVACPNDHRRFFPNAASKVNSLHLKYFIVSGRIIALALKKKVHVGIVFDRVFFKQLAGNYIITLEDIRDADPIMYSSCKQILEMDADYIDSDALGLTFSTEVEELGHRELIELCPGGESLVVDSKNREKYVHLLIHNRFVTSISKQVSHFAQGFADIISCSRLEFFQFLDHEDFDWMLHGSENAISVEDWKAHTNYHGYKETDHQISWFWKIVGRMSAEQKKVLLFFWTSVKHLPVEGFCGLSSTLLISKSSKPDNHLPSSHTCFYKLCFPPYSSMAIMQDRLGIITQEYISCSFGTP 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g01005 826 CDD HECTc 467 824 IPR000569 GO:0004842
Mepo6g01005 826 SMART ubq_7 45 117 IPR000626 GO:0005515
Mepo6g01005 826 FunFam E3 ubiquitin-protein ligase UPL5 710 825 - -
Mepo6g01005 826 Gene3D Hect, E3 ligase catalytic domain 587 670 - -
Mepo6g01005 826 Gene3D Hect, E3 ligase catalytic domains 469 695 - -
Mepo6g01005 826 Gene3D Hect, E3 ligase catalytic domain 710 825 - -
Mepo6g01005 826 SMART hect_3 485 824 IPR000569 GO:0004842
Mepo6g01005 826 Pfam HECT-domain (ubiquitin-transferase) 516 817 IPR000569 GO:0004842
Mepo6g01005 826 Gene3D - 37 130 - -
Mepo6g01005 826 SUPERFAMILY Ubiquitin-like 28 119 IPR029071 -
Mepo6g01005 826 Pfam Ubiquitin family 48 118 IPR000626 GO:0005515
Mepo6g01005 826 SUPERFAMILY Hect, E3 ligase catalytic domain 466 811 IPR035983 GO:0004842
Mepo6g01005 826 PRINTS Ubiquitin signature 98 119 IPR019956 -
Mepo6g01005 826 PRINTS Ubiquitin signature 56 76 IPR019956 -
Mepo6g01005 826 PRINTS Ubiquitin signature 77 97 IPR019956 -
Mepo6g01005 826 ProSiteProfiles Ubiquitin domain profile. 45 120 IPR000626 GO:0005515
Mepo6g01005 826 ProSiteProfiles HECT domain profile. 508 826 IPR000569 GO:0004842
Mepo6g01005 826 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 46 824 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g01005 Mepo-Chr6 10549803 10553661 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g01005 45 119 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 36.000 1.81e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g01005 - - mtr:11406418 1568.9