Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g00967 ATGTCTCAAAACTATGATTGCTCCGCCATGTCTCCACCACAACCCAGCCGTGTAGAACCAAAGATTTGGCGGTGCTGCGCCGGACACTCCGTCAAAATTCCAAAACTTCATTCCAAAGTTTACTATTTCCCGCAAGGTCACTTAGAACATGCTTGCCCTAATTCCCCCAACAGTGAAACCCTACCCTTTCTTGATGGTCACCGTCCTTTCAATCCTTGCATCGTATCGGCGGTTGAACTCCTCGCTGATCCTCATACGGACGAAGTCTTCCTCAAACTTCTCCTAACTCCCATCACCGATGGTTGCATTCACGAACCTACCACTGAGGTTCATGAAGATGAACATAAAGGTGATGAGTTTATTTCCTCCGGAAAGACTCTAACCCTATCTGATGCTAATAACGGTGGTGCATTCTCAGTACCTCGTTCTTGTGCGACATCAGTCTTCCCACCGCTTGACCTCAAAACAAAACAGCCATCTCAAGAACTGTCTGTTACCGACGTTCATGGCAAAGTCTGGGAGTTTCGCCATGTCTACCGTGGGACTCCCTTGAGACACCTGATCACAACTAACTGGAGTAAGTTCGTAGATGAAAAGAAACTCGTCTGCGGTGATTCCGTAATTTTTATGAACAACAAAAACTCATCTGGAGATATGTTTGATGGAATCCGTCGGCATACTAAATTTGGTGCTGCTAAGATAACTAAAGAATCGGTTATGGAGGTAGCGGAGTTGGCGAATAAGAACATCGCTTTTGAAATTGAGTATTATCCTACGGTTGAAGGGTTTTGTGATTTTGTGGTGGATGCTAAGGTTGTTGAGGATGCAGTGAAGATTAACTGGAATTGTGGAATGCGAATTAGATTTTCTTTGAAAAATGAGGATTCTTCAAAGAGATGGTCAGTGTTTAAGGGTACAATATCAGCTCTCTCGGCTCCTAATCGTCCATGGCGCATGCTTGAGGTTAACTGGGATGGACCTGAAGTCTCACATAATCCAAAGCAAAGCCCTTGGGAGATTGAACTAATTTCTTATATACCTGCACTGAATCTACAATTGCCCCCAACAAAAAGGCTTAGAGTTGCTCAGGGTTCTACCTAA 1101 0.4432 MSQNYDCSAMSPPQPSRVEPKIWRCCAGHSVKIPKLHSKVYYFPQGHLEHACPNSPNSETLPFLDGHRPFNPCIVSAVELLADPHTDEVFLKLLLTPITDGCIHEPTTEVHEDEHKGDEFISSGKTLTLSDANNGGAFSVPRSCATSVFPPLDLKTKQPSQELSVTDVHGKVWEFRHVYRGTPLRHLITTNWSKFVDEKKLVCGDSVIFMNNKNSSGDMFDGIRRHTKFGAAKITKESVMEVAELANKNIAFEIEYYPTVEGFCDFVVDAKVVEDAVKINWNCGMRIRFSLKNEDSSKRWSVFKGTISALSAPNRPWRMLEVNWDGPEVSHNPKQSPWEIELISYIPALNLQLPPTKRLRVAQGST 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g00967 366 Gene3D - 124 226 IPR015300 -
Mepo6g00967 366 SUPERFAMILY DNA-binding pseudobarrel domain 121 220 IPR015300 -
Mepo6g00967 366 ProSiteProfiles B3 DNA-binding domain profile. 123 227 IPR003340 GO:0003677
Mepo6g00967 366 CDD B3_DNA 125 209 IPR003340 GO:0003677
Mepo6g00967 366 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 361 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mepo6g00967 366 Pfam Auxin response factor 243 320 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mepo6g00967 366 Gene3D - 280 347 - -
Mepo6g00967 366 SMART B3_2 125 226 IPR003340 GO:0003677
Mepo6g00967 366 Pfam B3 DNA binding domain 125 226 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g00967 Mepo-Chr6 10100568 10102499 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g00967 10 363 B3 DNA Binding Superfamily AT1G77850 41.019 6.12e-98 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mepo6g00967 B3 1.6e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g00967 - - mtr:11413246 446.817