Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g00942 ATGGCCACTTTAATCAACTTTATTATTCTCCTTCATCTTATCTCATTATGTTTAATTCTACCAACCTTAGCTAAAAATTCAGATTCAAAAAATGATTATAACAACGACCTATTAGACAATATTCCAACTCCCAGTTACAACAACATCCCCAATAGTAACACTCCACAAAATGTTGTTGTCATGAACACAATTGACTCATGCTGGAGAACAAATTCAAACTGGGCTTCAAATCGTCAATCATTAGCAGATTGTGCAATTGGATTTGGCAAAGATGCAATTGGTGGAAAATATGGTGAAATATATGAAGTCACTGACCCTTTTGATGATCCAATAAACCCTAAACAAGGTACACTTCGTTATGGTGTAATTCAAGCAGAACCACTTTGGATAACTTTTGCAAATGACATGGTAATTAAATTGAAAAATGAACTTATTGTGAATAGTTACAAGACAATTGATGGTAGAGGTGCTAAAGTTGAAATTGGAAATGGACCATGTATTACAATACAAGGTGTTAGTCATGTGATTGTGCATGGAATTAGTATTCATGATTGTAAACCAAGTAATCCTGGTATGGTTAGAAGTAGTATTGAACATGTTGGTTATCGTCAAGGTTCTGATGGTGATGGTATTAGTGTTTTTGCTTCTTCTAATATTTGGATTGATCATTGCTTCTTGGCAAGATGTACGGATGGTCTTACTGATGTTACTCATGCCTCAACTCTTGTCACTATCTCAAATAATTACTTCACTCAGCATGACAAAGTGATGCTACTTGGACACAACGACGATTACAGTGCTGATAGAGTAATGAAAGTAACAGTAGCTTTCAACCGCTTTGCCAGTGGCCTAATAGAAAGAATGCCAAGGGTAAGATTTGGTTATGCCCATGTTGTAAACAACCGATATGATGAGTGGATCATGTATGCCATTGGTGGTAGTGCTGACCCTACCATTTTCAGTCAAGCAAACTATTTCATAGCTTCAAAAAATTCTAATGCAAAACAGGTTACAAAGAGAGAAACCGATGGAAAATGGAAAAATTGGAAATGGAGGACTTATGGGGATGAATTCTTGAACGGTGCTTATTTTGTGCCATCTGGATATGGAAGTTGTACCCCATTATATTCATCATCTCAAAACTTTGTTGCTGCTAAGGCATCTATGGTGCCTTTATTAACACTCAATGCAGGACCTCTTGATTGCGTTGCTAACAAAGCATGTTAA 1227 0.3635 MATLINFIILLHLISLCLILPTLAKNSDSKNDYNNDLLDNIPTPSYNNIPNSNTPQNVVVMNTIDSCWRTNSNWASNRQSLADCAIGFGKDAIGGKYGEIYEVTDPFDDPINPKQGTLRYGVIQAEPLWITFANDMVIKLKNELIVNSYKTIDGRGAKVEIGNGPCITIQGVSHVIVHGISIHDCKPSNPGMVRSSIEHVGYRQGSDGDGISVFASSNIWIDHCFLARCTDGLTDVTHASTLVTISNNYFTQHDKVMLLGHNDDYSADRVMKVTVAFNRFASGLIERMPRVRFGYAHVVNNRYDEWIMYAIGGSADPTIFSQANYFIASKNSNAKQVTKRETDGKWKNWKWRTYGDEFLNGAYFVPSGYGSCTPLYSSSQNFVAAKASMVPLLTLNAGPLDCVANKAC 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g00942 408 SMART amb_all 135 332 IPR002022 -
Mepo6g00942 408 Pfam Pectate lyase 140 326 IPR002022 -
Mepo6g00942 408 PRINTS Pollen allergen Amb family signature 84 101 IPR018082 -
Mepo6g00942 408 PRINTS Pollen allergen Amb family signature 207 228 IPR018082 -
Mepo6g00942 408 PRINTS Pollen allergen Amb family signature 287 306 IPR018082 -
Mepo6g00942 408 PRINTS Pollen allergen Amb family signature 143 159 IPR018082 -
Mepo6g00942 408 PRINTS Pollen allergen Amb family signature 379 402 IPR018082 -
Mepo6g00942 408 PRINTS Pollen allergen Amb family signature 309 328 IPR018082 -
Mepo6g00942 408 PRINTS Pollen allergen Amb family signature 349 373 IPR018082 -
Mepo6g00942 408 PRINTS Pollen allergen Amb family signature 107 132 IPR018082 -
Mepo6g00942 408 SUPERFAMILY Pectin lyase-like 56 399 IPR011050 -
Mepo6g00942 408 PANTHER PECTATE LYASE 18-RELATED 54 406 IPR045032 GO:0030570
Mepo6g00942 408 Gene3D - 61 401 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g00942 Mepo-Chr6 9882483 9885044 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g00942 34 408 Polysaccharide Lyase AT4G22080 68.533 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g00942 K01728 - gmx:100803229 634.024