Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g00918 ATGATTCTGGATCTAGGGGTTTGGGACCTTTATTCCACAAGCATAAAAAAAGTGGAGAAGGAGATAAAAGATATGGCGAAGAAAGTGAATGACTTATGTGTGGAAATCTCCCACCGACAACAGAAACAACAAGAATTGCAGAAAAAACTTGGCACCTTCTGGGCAAAACAAAATGAAGAAGTTGAGAAGACTGTTGATTTCAAAAATAATTGCTTGCCATTAGCAAGGATTAAGAAGATAATGAAAGCAGAAGAAGGAGTGAGTATAATATCAGCTGAGGCACCTATTCTGATTGCTAAGGCATGTGAAATGTTTATTATGGAGCTAACAACAAGGTCTTGGGCTAATGCAGAGGTGAACAAAAGAAAGACACTTCAAAATAGTGACATTGCATCTGGTGTCTCAAGTAATGAAGTGTTTGATTTCCATTGTTACAACTTACAACTATTGCGCCATGCAACTACCGTAGAGGGAATCAGATCCTCTCCATTTTCACTAGAAATGGAGATCTCAACTTCTTTCTATTTGCATTAG 534 0.3783 MILDLGVWDLYSTSIKKVEKEIKDMAKKVNDLCVEISHRQQKQQELQKKLGTFWAKQNEEVEKTVDFKNNCLPLARIKKIMKAEEGVSIISAEAPILIAKACEMFIMELTTRSWANAEVNKRKTLQNSDIASGVSSNEVFDFHCYNLQLLRHATTVEGIRSSPFSLEMEISTSFYLH 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g00918 177 Coils Coil 15 35 - -
Mepo6g00918 177 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 72 132 IPR003958 -
Mepo6g00918 177 Gene3D Histone, subunit A 33 143 IPR009072 GO:0046982
Mepo6g00918 177 SUPERFAMILY Histone-fold 50 142 IPR009072 GO:0046982
Mepo6g00918 177 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 41 142 - -
Mepo6g00918 177 FunFam Nuclear transcription factor Y subunit C 37 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g00918 Mepo-Chr6 9428169 9431203 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g00918 50 142 CCAAT-HAP5 Transcription Factor Family AT1G56170 64.516 2.36e-40 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Mepo6g00918 CBFD_NFYB_HMF 2e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g00918 K08066 - twl:119990009 139.043