Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g00896 ATGATGCAACCAGGACACGGCATGGCTCCTCCCACCATGGGCCAACAGCCACCGCAACAATACCAACAGCCACCGCAACAGCAGCCGTACGTCATGATGCCACCACAACAGCCGCCGGCTATGTGGGCTGCCCAATCCGCTCAGCCTCCTCAGCAGCCCGCCAGCGCTGATGAGGTCCGTACTCTCTGGATCGGTGATTTGCAGTACTGGATGGATGAGAATTATCTCTATACCTGCTTTGGTAACACAGGCGAGTTGACATCTGTGAAAGTTATTAGAAATAAGCAAACTAGTCAATCAGAAGGTTATGGCTTTATCGAGTTTAACTCTCGTGCTACTGCTGAGAGAGTGCTTCAGACATACAATGGAACCATTATGCCGAATGGTGGTCAGAACTACAGATTGAACTGGGCAACTTTCAGTGCTGGGGAAAGGTCGTCGAGACAGGATGATGGTCCTGACCATACCATTTTTGTTGGTGATTTGGCTGCGGATGTTACTGATTACCTTCTTCAGGAGACTTTTAGGGCTCGTTATAACTCTGTGAAGGGGGCGAAAGTTGTGATTGATAGGCTTACTGGTAGGTCTAAGGGTTATGGTTTTGTGAGATTTGCTGATGAGGGCGAACAGATGAGGGCTATGACCGAGATGCAAGGGGTTCTTTGTTCAACTAGACCCATGAGGATTGGACCAGCTACTAATAAAAACCCTGCTGCCACCACTCAGCCGAAAGCTTCGTATAACCCTAGTGGCGGACAAAGCGAGAATGATCCCAATAACACAACTATTTTTGTTGGCAACTTGGATCCAAATGTCACTGACGATCATCTGAGGCAAGTTTTCACCCAATATGGTGAACTAGTACATGTGAAGATTCCATCAGGCAAGCGATGCGGGTTTGTCCAATTTTCGGACAGGAGCTGTGCAGAAGAGGCAATACGTGTTTTGAACGGTACTTTATTGGGTGGACAAAATGTTCGCCTTTCATGGGGACGCACTCCTTCAAACAAACAGACTCAGCAAGATCCAACCCAGGGTGGTTACCCTGCTGCTGGTGGATATTACGGCTATGCCCAGGGTGGTTATGAGAATTATGGTTACGCTGCTCCTCCTGCTGGACAGGATCCCAATGTGTATGGAAGTTATCCAGGGTATCCTGGTTACCAACACCCACAGCAGCAACAACAGCAAATGGGATATAGCTAA 1206 0.4842 MMQPGHGMAPPTMGQQPPQQYQQPPQQQPYVMMPPQQPPAMWAAQSAQPPQQPASADEVRTLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNSRATAERVLQTYNGTIMPNGGQNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPATNKNPAATTQPKASYNPSGGQSENDPNNTTIFVGNLDPNVTDDHLRQVFTQYGELVHVKIPSGKRCGFVQFSDRSCAEEAIRVLNGTLLGGQNVRLSWGRTPSNKQTQQDPTQGGYPAAGGYYGYAQGGYENYGYAAPPAGQDPNVYGSYPGYPGYQHPQQQQQQMGYS 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g00896 401 MobiDBLite consensus disorder prediction 234 260 - -
Mepo6g00896 401 MobiDBLite consensus disorder prediction 387 401 - -
Mepo6g00896 401 MobiDBLite consensus disorder prediction 228 260 - -
Mepo6g00896 401 MobiDBLite consensus disorder prediction 41 55 - -
Mepo6g00896 401 Gene3D - 242 368 IPR012677 -
Mepo6g00896 401 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 51 337 - -
Mepo6g00896 401 MobiDBLite consensus disorder prediction 329 346 - -
Mepo6g00896 401 CDD RRM1_SECp43_like 61 141 - -
Mepo6g00896 401 MobiDBLite consensus disorder prediction 22 36 - -
Mepo6g00896 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 62 127 IPR000504 GO:0003723
Mepo6g00896 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 157 220 IPR000504 GO:0003723
Mepo6g00896 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 263 326 IPR000504 GO:0003723
Mepo6g00896 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 140 IPR000504 GO:0003723
Mepo6g00896 401 MobiDBLite consensus disorder prediction 329 348 - -
Mepo6g00896 401 Gene3D - 10 144 IPR012677 -
Mepo6g00896 401 MobiDBLite consensus disorder prediction 376 401 - -
Mepo6g00896 401 MobiDBLite consensus disorder prediction 1 57 - -
Mepo6g00896 401 FunFam Polyadenylate-binding protein RBP45 10 145 - -
Mepo6g00896 401 SUPERFAMILY RNA-binding domain, RBD 21 142 IPR035979 GO:0003676
Mepo6g00896 401 FunFam Polyadenylate-binding protein RBP45C 146 238 - -
Mepo6g00896 401 Gene3D - 145 241 IPR012677 -
Mepo6g00896 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 261 333 IPR000504 GO:0003723
Mepo6g00896 401 SUPERFAMILY RNA-binding domain, RBD 146 241 IPR035979 GO:0003676
Mepo6g00896 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 234 IPR000504 GO:0003723
Mepo6g00896 401 FunFam Polyadenylate-binding protein RBP45C 239 343 - -
Mepo6g00896 401 SMART rrm1_1 262 329 IPR000504 GO:0003723
Mepo6g00896 401 SMART rrm1_1 61 136 IPR000504 GO:0003723
Mepo6g00896 401 SMART rrm1_1 156 230 IPR000504 GO:0003723
Mepo6g00896 401 CDD RRM2_SECp43_like 154 233 - -
Mepo6g00896 401 SUPERFAMILY RNA-binding domain, RBD 245 361 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g00896 Mepo-Chr6 9213836 9218271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g00896 61 340 Eukaryotic Initiation Factors Gene Family AT4G34110 27.368 1.69e-29 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g00896 - - gmx:100794675 565.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g00896 6 9213836 9218271 Mepo6g00896 6 9213836 9218271 ECH