Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g00878 ATGGCTACTTTCACCTCCTTCTCTTCTCCATCATCATCTTCTTCCACTCCTCCTCCTTTCTCAGCTCCATCCTCTTCTTCACCTTTCGATGATGACTCTTTTGAAGACTCTTGCAGTATTTGCTTAGAATCCTTCAGTGTTCATGACCCATCTACTGTTACTTGTTGCAAACATGAATATCACCTGCATTGCATTCTTGAATGGTCACAGAGAAGCAAAGAGTGTCCAATATGTTGGCAATCACTTTCTTTGAAAGACCCTGCTTGCCAAGAGCTTCTTGACGCTGTGGAGGCTGAAAAAAACTTAAGATCAAGAAACAATCATTCATCTTCACTCACTAATTCTCGTGTCCCCTTTGGATATTCTAATGGTGATCATGATGATTCCTCGGATGAAATTGATTTTGATGAGGAAATTATGCAGCACCTATATGCTGCTGCAAGTAGAGCTCGTTTTGTTCAGAGACAGAGAAGACAGGGATCATCTGGAGCAGGTCCATCAGAGATTCTTGTTTTCAACTCTTCTGGGCCTGTATCTGGGATGCAACCAACACTTACAACTTCACCAGCTGGCGGTAGTTCACCAACCACTGATTTACCATCAACTGCCAACGCTCGTCCTGAGGTTGCAAGAAACACTAGTCCTGAGGTTGATGTCCCTTACAGACCAAGAGTTCTTTACAGTCCGTCACCACCTCAGGATGAGAGGAAACTTAATACTTCTGAGATATTCTCCTTTCCCGAGTCCTTCAAATCTAAATTTTCTGCTGCTTCGGCCAGATATAAGGAATCAATTTCTAAAAGTACTCGTGGCCTTAAAGAAAAGTTACTGGCTCGTAATGCCACAGTGAAAGAGCTGAGTAAAGGTGTTCAACGTGAGATGAATGCTGGCATAGCTGGAGTTTCACGTATGATTGAACGCCTTGATCTTGCCTCAAAAAGGTCGGGTTCTCCTCTAATTCCTGTCCGTAATGGGGGAGCTTCAGGCTTTCCCGAAGGGAAGTCTGTTGAAGAGAAAGACATTGGGAATTCTCAAAATGAAGCAAGTGGAAGTGTTGCTCGTAATGTTAGTTCAGATGCCCCCTCACACATTTCTAGCACTGCTGTTGCTGGTCGAATGGAAATTCCTCCATATGTTCAGAGAGGACATGATGCTGTGAAGACTTAG 1167 0.437 MATFTSFSSPSSSSSTPPPFSAPSSSSPFDDDSFEDSCSICLESFSVHDPSTVTCCKHEYHLHCILEWSQRSKECPICWQSLSLKDPACQELLDAVEAEKNLRSRNNHSSSLTNSRVPFGYSNGDHDDSSDEIDFDEEIMQHLYAAASRARFVQRQRRQGSSGAGPSEILVFNSSGPVSGMQPTLTTSPAGGSSPTTDLPSTANARPEVARNTSPEVDVPYRPRVLYSPSPPQDERKLNTSEIFSFPESFKSKFSAASARYKESISKSTRGLKEKLLARNATVKELSKGVQREMNAGIAGVSRMIERLDLASKRSGSPLIPVRNGGASGFPEGKSVEEKDIGNSQNEASGSVARNVSSDAPSHISSTAVAGRMEIPPYVQRGHDAVKT 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g00878 388 MobiDBLite consensus disorder prediction 155 209 - -
Mepo6g00878 388 MobiDBLite consensus disorder prediction 102 131 - -
Mepo6g00878 388 MobiDBLite consensus disorder prediction 315 388 - -
Mepo6g00878 388 MobiDBLite consensus disorder prediction 342 365 - -
Mepo6g00878 388 SMART ring_2 38 78 IPR001841 -
Mepo6g00878 388 ProSiteProfiles Zinc finger RING-type profile. 38 78 IPR001841 -
Mepo6g00878 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 110 IPR013083 -
Mepo6g00878 388 Pfam Ring finger domain 36 78 IPR001841 -
Mepo6g00878 388 MobiDBLite consensus disorder prediction 105 120 - -
Mepo6g00878 388 MobiDBLite consensus disorder prediction 155 237 - -
Mepo6g00878 388 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 14 87 - -
Mepo6g00878 388 SUPERFAMILY RING/U-box 35 85 - -
Mepo6g00878 388 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g00878 Mepo-Chr6 9061107 9064979 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g00878 32 86 C3H Transcription Factor Family AT4G00335 47.273 2.23e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g00878 K19043 - gmx:100785684 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g00878 6 9061107 9064979 Mepo6g00878 6 9061107 9064979 ECH