Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g00855 ATGGGTATTACGTGGAGTAACAGAAGAAGAAACAATTTCATTCAAAACCCACCACCACAACCACCACAACTTCCACCACCACCGCCACCACCACCTTACTATTACTCAGCAGAATCACACCCTCCACCACCACCACAACAACATCAACAAAGTTACTACTATCCCCCCTCAACTACTCCTTACACCCCACAACCTCAACCTCAACCCCATTCATTCTACTTCTCCAACCCTAACAATAACTATCCTCCCAATTCTACTACCAATCGCATTCAATATCATCCTTCTTATCATCTCAATCAACAACAACAACAACCTCAATATGCATGGCCTCCACCTCCTCCCCAGTTTTACGCTCCTGCTGCTGCTGCTGCTTCTTCCACCCCACCTCCTTATGTTGATCATCAAACTGCTAAAAAGATTAGAAACAATGTTAATGTTCATAAAGATACGCTTCGCCTTGAGGTTGATCAGCATAACCCTGATCATTACCTTGTTTCTTTTGTTTTCGATGCCGTCTTTGATGGAAGCATTACTGTCTTTTACTTTGCGAAGGAAGAAGATAAATGTAGGTTTGTTCCACTCTTTCCTGATGCATTTGTGCCAGTCAAAGTCCCCTTTAAGAAAGGAGTTGGCCAGAAATTTGCTCAGCCTTCAGGAACAGGGATTGACCTAGGCTTCTTTGAGTTAGATGATCTTTCAAAGCCTTCACCTGGGGAAGATGTCTTTCCTCTTGTAATATGCGCTGAAACATGTTTGGAAACTCCCTCAGAAAACGAAACTCCTAAAACTCCAGATGATTCCGTGCTAGATGCATCCCCTCACATGCAAATTACTCAAGCTGTCTTGGAGAAAAGTAATGGTGGTGGTGCTTTCCAGATAAAAGTAGTTAGACAGATTCTGTGGATTGATGGTGTTCGTTATGAGTTGAGAGAACTATATGGAATAGGAAGCTCAGAAGCTGCAGGCTTTGATGACAGTGATCCTGGGAAGGAGTGTGTAATATGCATGACTGAACCAAAGGATACAGCTGTCTTACCTTGTCGACATATGTGTTTGTGCAGCGAGTGTGCGAAAGCTCTGCGGCTTCAATCCAATAAATGCCCTATATGCCGTCAGCCAATAGAGGAACTTATGGAGATCAGGGTGAAGAGTAGCGATCCATGA 1164 0.4364 MGITWSNRRRNNFIQNPPPQPPQLPPPPPPPPYYYSAESHPPPPPQQHQQSYYYPPSTTPYTPQPQPQPHSFYFSNPNNNYPPNSTTNRIQYHPSYHLNQQQQQPQYAWPPPPPQFYAPAAAAASSTPPPYVDHQTAKKIRNNVNVHKDTLRLEVDQHNPDHYLVSFVFDAVFDGSITVFYFAKEEDKCRFVPLFPDAFVPVKVPFKKGVGQKFAQPSGTGIDLGFFELDDLSKPSPGEDVFPLVICAETCLETPSENETPKTPDDSVLDASPHMQITQAVLEKSNGGGAFQIKVVRQILWIDGVRYELRELYGIGSSEAAGFDDSDPGKECVICMTEPKDTAVLPCRHMCLCSECAKALRLQSNKCPICRQPIEELMEIRVKSSDP 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g00855 387 CDD mRING-HC-C3HC5_MGRN1-like 330 371 IPR045195 -
Mepo6g00855 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 318 381 IPR013083 -
Mepo6g00855 387 ProSiteProfiles Zinc finger RING-type profile. 332 371 IPR001841 -
Mepo6g00855 387 MobiDBLite consensus disorder prediction 68 91 - -
Mepo6g00855 387 MobiDBLite consensus disorder prediction 15 50 - -
Mepo6g00855 387 Pfam Zinc finger, C3HC4 type (RING finger) 330 376 - -
Mepo6g00855 387 MobiDBLite consensus disorder prediction 1 91 - -
Mepo6g00855 387 FunFam probable E3 ubiquitin-protein ligase LOG2 316 381 - -
Mepo6g00855 387 SUPERFAMILY RING/U-box 331 378 - -
Mepo6g00855 387 SMART ring_2 332 370 IPR001841 -
Mepo6g00855 387 PIRSF SBP1_RNase_bind 314 383 IPR017066 -
Mepo6g00855 387 PIRSF SBP1_RNase_bind 35 164 IPR017066 -
Mepo6g00855 387 PANTHER MAHOGUNIN 1 382 IPR045194 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g00855 Mepo-Chr6 8785228 8791694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g00855 104 386 C3H Transcription Factor Family AT3G06140 59.859 3.72e-113 333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g00855 6 8785228 8791694 Mepo6g00855 6 8785228 8791694 ECH