Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g00772 ATGCAACAACATCAACTATTAACCACTGATGAAGCTCCCAAGATTTCCCATCAGACTGAGACCGGGCTAAACAATGAAATATCAGATAGTGGAGCTAACGGGAGGCGCCCAGATATTTCACTTCAAGTTCCACCACGACCTTTAGGGTTTGGCAGCACCGCTGGTGGAAAGGTTCTGGACCACTCCCAAAGTTTCTCTAAAGGGAGATCATCACCTGGCTTTTTGCGGGCTTTGAGCTTCAAAAGAAAAGTGAATGTAGCAGATGGTGAAAGAAGCAGCCTTCTTAATTCCGACCCTAAGACAGCTGCAGAGAGTACTAGTATGACCTCCATATCTGAAATTCCATGGTCAAGATGTAATTCTCTTCCTGTTTCCCATGCACCAAATCTATCCCCTTCAGTTGCTGCTACCCCCGTGTCTGCAAGGACATATAATGAACAACAGATTAAGCCACATAAAGATGTTAAATCTAAGGTTTCAAGGTCCCTTTCTATACCTGGACGAAATGTTGTTATTGTAAGATCTGTCTCTTTTAATACCCGCAGTGAACAGGACAAAGAAGATACAAATGACGATCAAATAACTCCTGCGCCAGTAGAAGTTACTGAAGATGAAGAAATTCCTGAAGAGGCAGCTGTGTGCAGGATATGTCTTGATGAGTGCGATGAAGGAAATACCTTTAAAATGGAATGCTATTGTAAAGGTGACCTGAGATTGGTGCATGAAGAATGTTTAATCAAATGGCTCAACACAAAAGGAACCAACAAATGTGAAATATGCGGGAAAGAGGTTCAGAATTTACCGGTAACCTTGCTCCGTGTATCCAGCTCTATTCAACGAAGAAACAGACAGCTTCAGGATCACCAGAACTTTAATTCAGAGACAATAAGTGCCTGGCAAGACTTTGTGGTGCTTGTCCTGATAAGCACAATATGCTATTTTTTCTTCCTTGAACAGCTACTGCTTCCTGATTTGAAGACTCAAGCTATCATTATGTCAGCACCATTTTCCTTTACTTTGGGCCTCCTGGGGTCTGTTTTTGCAATCGTCCTTGCAATCAAAGAGTATATATGGACATATGCCGCTCTTGAGTTTGCACTTGTGGCTGTAACTGTACATCTGTTTTATACTATGTTGCATTTGGCGCCAATTTATTCAATACTACTTTCAACAGTTTTTGGTTTTGGAATTGCTATGGGAATCAACTATATGTATATCCAGTATGTTACTTGGAGACTTCAGGTCTCTATTAATGAGAACCCAGCATAA 1269 0.4137 MQQHQLLTTDEAPKISHQTETGLNNEISDSGANGRRPDISLQVPPRPLGFGSTAGGKVLDHSQSFSKGRSSPGFLRALSFKRKVNVADGERSSLLNSDPKTAAESTSMTSISEIPWSRCNSLPVSHAPNLSPSVAATPVSARTYNEQQIKPHKDVKSKVSRSLSIPGRNVVIVRSVSFNTRSEQDKEDTNDDQITPAPVEVTEDEEIPEEAAVCRICLDECDEGNTFKMECYCKGDLRLVHEECLIKWLNTKGTNKCEICGKEVQNLPVTLLRVSSSIQRRNRQLQDHQNFNSETISAWQDFVVLVLISTICYFFFLEQLLLPDLKTQAIIMSAPFSFTLGLLGSVFAIVLAIKEYIWTYAALEFALVAVTVHLFYTMLHLAPIYSILLSTVFGFGIAMGINYMYIQYVTWRLQVSINENPA 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g00772 422 MobiDBLite consensus disorder prediction 89 110 - -
Mepo6g00772 422 MobiDBLite consensus disorder prediction 1 31 - -
Mepo6g00772 422 Pfam RING-variant domain 214 260 IPR011016 GO:0008270
Mepo6g00772 422 MobiDBLite consensus disorder prediction 1 70 - -
Mepo6g00772 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 269 IPR013083 -
Mepo6g00772 422 PANTHER OS02G0165000 PROTEIN 43 418 - -
Mepo6g00772 422 SMART ringv_2 213 261 IPR011016 GO:0008270
Mepo6g00772 422 MobiDBLite consensus disorder prediction 90 110 - -
Mepo6g00772 422 ProSiteProfiles Zinc finger RING-CH-type profile. 206 267 IPR011016 GO:0008270
Mepo6g00772 422 CDD RING_CH-C4HC3_MARCH 214 261 - -
Mepo6g00772 422 SUPERFAMILY RING/U-box 210 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g00772 Mepo-Chr6 7964993 7970229 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g00772 200 321 C3H Transcription Factor Family AT2G37950 26.154 1.09e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g00772 - - gmx:100777100 634.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g00772 6 7964993 7970229 Mepo6g00772 6 7964993 7970229 ECH