Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g00748 ATGGCGAAACTGTCGAAGCAACAACCTTCTTCCGACGAAGAACCGCTGAACTCTTCGTCGGAGGAAGTGCAAGTGAATGAAGAGATCAACGAAGAAGAAGATCAAGAGGAGCTGGAAGCTGTAGCTCGTGCTGTTAGTTCTGATGATGATGATGAAGTCGTTGGCAATAATCCGCCGGATTCTGATGCAGATGCTGCTGGTGAAGATGGTGATGATGATGGAGAGGGAGAAGGTGGTCCTGAAATAAGCAAACGCGAGAAGGCGAGATTGCGAGAAATGCAAAAACTGAAGAAACAGAAAGTTCAGGAGATATTAGATGCTCAAAATGCAGCAATTGAAGCTGACATGAATAATAGAGGAAAGGGGCGATTGAAGTATCTGTTACAGCAGACTGAGCTGTTTGCCCATTTTGCAAAAGGTGACCAATCATCTCAAAAGAAGTCAAAAGGAAGTGGTCGTCATGCGTCAAAAGTGACTGAAGAAGAGGAAGATGAAGAGTACCTGAAAGGAGAAGAAGACGGTGTTTCAAACACTCGTCTGGTGACACAGCCATCATGTATTCAAGGGAAGATGAGGGATTACCAATTGGCTGGACTAAACTGGCTCATTCGATTATATGAAAATGGAATAAATGGAATTCTGGCCGATGAGATGGGGCTTGGTAAAACATTGCAAACTATATCTTTAATGGGCTACTTGCATGAGTTCAGAGGAATTAAAGGCCCTCATATGGTGGTTGCCCCAAAATCAACTCTTGGAAATTGGATGAATGAGATTCGTCGCTTTTGTCCTATTTTGCGTGCTGTAAAATTCCTTGGCAACCCTGAAGAAAGGAGACATATAAGAGAGGACTTATTGGTTGCTGGAAAGTTTGACGTTTGTGTTACAAGTTTTGAAATGGCTATCAAGGAGAAGTCTACTTTACGTCGATTTAGTTGGCGCTACATAATTATCGATGAAGCTCATAGAATCAAGAACGAGAATTCATTGCTCTCTAAAACAATGAGGATTTACAATACAAACTATCGCCTCCTTATCACTGGTACACCGCTTCAGAATAATCTTCATGAACTTTGGTCTCTTCTCAACTTTCTTCTGCCTGAAATTTTTAGTTCTGCTGAAACCTTTGATGAGTGGTTTCAAATCTCTGGTGAAAATGACCAACAGGAGGTTGTGCAGCAATTACACAAGGTCCTCCGGCCATTTCTTCTTCGAAGGTTGAAGTCCGATGTTGAGAAAGGGTTGCCACCGAAAAAAGAAACTATTCTTAAAGTGGGCATGTCACAATTGCAGAAACAGTATTATAAAGCATTACTGCAGAAGGATCTTGAGGTTGTCAATGCTGGCGGAGAACGGAAGCGCCTCCTGAATATAGCTATGCAACTGCGCAAATGTTGTAATCATCCATATCTTTTCCAAGGTGCTGAACCTGGTCCTCCTTATACAACAGGAGATCATCTCATCACCAGTGCTGGTAAAATGGTTCTTTTGGATAAGTTGCTTCCTAAATTAAAAGAGCGTGATTCCAGGGTCCTTATATTTTCACAGATGACTAGGCTGTTAGATATACTTGAAGATTATTTGATGTTCCGTGGATATCAATATTGTCGCATAGATGGCAATACTGGTGGGGATGATCGTGATGCCTCCATTGATGCTTTCAACAAACCGGGAAGTGAGAAATTTGTCTTCTTGTTATCAACTCGAGCTGGAGGTCTTGGTATTAATCTTGCTACTGCTGATGTCGTCATTTTGTATGATAGTGACTGGAACCCACAAGTTGACTTGCAGGCTCAAGATCGTGCTCATAGGATAGGTCAGAAGAAAGAAGTTCAAGTTTTCCGTTTTTGCACCGAGTATACGATTGAGGAGAAAGTCATTGAAAGAGCTTACAAAAAGCTTGCACTTGATGCTTTGGTGATTCAACAGGGGCGATTGGCTGAGCAGAAGACGGTAAATAAAGATGAGTTACTTCAAATGGTTAGATTTGGAGCTGAAATGGTTTTCAGTTCCAAGGATAGTACAATTACAGATGAGGATATTGATAGAATTATTGCCAAAGGAGAAGAGGCAACTGCGGAGCTTGATGCCAAGATGAAGAAATTTACAGAAGATGCAATCAAATTTAAGATGGATGACACTGCTGAGTTATACGATTTTGATGATGCTAAGGATGAGAACAAGTTTGATTTCAAAAAAATTGTGAGTGAAAACTGGGTTGAACCAACAAGAAGGGAGCGGAAGCGCAATTACTCGGAGTCTGAATACTTCAAACAAACCATGCGGCAAGGTGGTCCTTCTAAACCAAAGGAGCCCCGCATTCCTAGGATGCCACAGTTGCATGATTTCCAGTTTTTCAACACACCGAGATTGAGTGAGTTGTATGAAAAGGAAGTACGCTATCTCATGCAAGCCCATCAGAAGAATCAGGTAAAGGACTCGATAGATGTTGATGAACCAGAAGAGGTAGGAGATCAATTGACCGCCGAAGAGATGGAAGAAAAGGAGCGCCTGCTAGAAGAGGGATTTTCATCATGGAGCCGAAAAGATTTTAACACCTTCCTCAGGGCCTGTGAGAAATATGGTCGAAATGATATACAAAGTATTGCCTCTGAGATGGAAGGAAAAACTGAGGAGGAAGTTGAAAGATATGCAAAGGTCTTCAAAGAAAGATACAAGGAATTAAATGATTATGATAGAATTATCAAAAACATCGAGAGGGGGGAGGCTAGAATTTCTCGGAAGGATGAGATCATGAAAGCTATTGGAAAGAAATTGGACCGCTACAAGAATCCTTGGCTAGAGTTGAAGGTACAGTATGGGCAAAACAAAGGGAAGCTATACAATGAAGAATGTGACCGATTCATGATATGCATGGTTCACAAACTTGGCTATGGAAACTGGGATGAGTTGAAGGCAGCGTTTCGAACATCACCCTTGTTTAGATTTGATTGGTTTGTCAAGTCTCGCACAACACAGGAACTTGCAAGGAGGTGCGACACCCTCATTCGGTTAGTAGAAAATGAAAATCAAGAATACGATGAGAGGGAGAGACAAGCTCGCAAAGAGAAGAAACTTGCCAAGAACATGACTCCGACAAAGCGGGCTTTGGCAAGACAAACTGAGAGTCCATCTTCTGCTAAGAAGCGGAAGCAGTCAACTATGGATGATTATGCTAGCACGGGGAAGAGGAGAAAATAA 3201 0.4189 MAKLSKQQPSSDEEPLNSSSEEVQVNEEINEEEDQEELEAVARAVSSDDDDEVVGNNPPDSDADAAGEDGDDDGEGEGGPEISKREKARLREMQKLKKQKVQEILDAQNAAIEADMNNRGKGRLKYLLQQTELFAHFAKGDQSSQKKSKGSGRHASKVTEEEEDEEYLKGEEDGVSNTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLMGYLHEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPILRAVKFLGNPEERRHIREDLLVAGKFDVCVTSFEMAIKEKSTLRRFSWRYIIIDEAHRIKNENSLLSKTMRIYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQLQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITSAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDAKDENKFDFKKIVSENWVEPTRRERKRNYSESEYFKQTMRQGGPSKPKEPRIPRMPQLHDFQFFNTPRLSELYEKEVRYLMQAHQKNQVKDSIDVDEPEEVGDQLTAEEMEEKERLLEEGFSSWSRKDFNTFLRACEKYGRNDIQSIASEMEGKTEEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKVQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVENENQEYDERERQARKEKKLAKNMTPTKRALARQTESPSSAKKRKQSTMDDYASTGKRRK 1066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g00748 1066 SMART helicmild6 522 606 IPR001650 -
Mepo6g00748 1066 Gene3D - 843 896 - -
Mepo6g00748 1066 CDD DEXHc_SMARCA1_SMARCA5 188 408 IPR044754 GO:0005524
Mepo6g00748 1066 Pfam HAND 755 837 IPR015194 GO:0003677|GO:0006338|GO:0031491
Mepo6g00748 1066 Gene3D ISWI, HAND domain 743 842 IPR036306 GO:0003677|GO:0006338|GO:0031491
Mepo6g00748 1066 FunFam ISWI chromatin-remodeling complex ATPase CHR11 412 704 - -
Mepo6g00748 1066 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 408 689 IPR027417 -
Mepo6g00748 1066 MobiDBLite consensus disorder prediction 750 771 - -
Mepo6g00748 1066 Gene3D - 412 704 IPR027417 -
Mepo6g00748 1066 MobiDBLite consensus disorder prediction 1 24 - -
Mepo6g00748 1066 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 406 IPR027417 -
Mepo6g00748 1066 CDD SANT 845 889 IPR001005 -
Mepo6g00748 1066 Gene3D - 930 1033 - -
Mepo6g00748 1066 Gene3D - 192 407 IPR038718 -
Mepo6g00748 1066 SMART ultradead3 187 379 IPR014001 -
Mepo6g00748 1066 MobiDBLite consensus disorder prediction 77 92 - -
Mepo6g00748 1066 MobiDBLite consensus disorder prediction 1011 1066 - -
Mepo6g00748 1066 MobiDBLite consensus disorder prediction 139 172 - -
Mepo6g00748 1066 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 496 647 IPR001650 -
Mepo6g00748 1066 Coils Coil 90 110 - -
Mepo6g00748 1066 MobiDBLite consensus disorder prediction 1 92 - -
Mepo6g00748 1066 Pfam SLIDE 899 1009 IPR015195 GO:0003677|GO:0005634|GO:0006338
Mepo6g00748 1066 SUPERFAMILY Homeodomain-like 897 1019 IPR009057 -
Mepo6g00748 1066 MobiDBLite consensus disorder prediction 1044 1066 - -
Mepo6g00748 1066 ProSiteProfiles SANT domain profile. 841 893 IPR017884 -
Mepo6g00748 1066 MobiDBLite consensus disorder prediction 142 163 - -
Mepo6g00748 1066 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 203 368 IPR014001 -
Mepo6g00748 1066 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 842 896 - -
Mepo6g00748 1066 SMART sant 944 1005 IPR001005 -
Mepo6g00748 1066 SMART sant 842 891 IPR001005 -
Mepo6g00748 1066 FunFam ISWI chromatin-remodeling complex ATPase CHR11 930 1033 - -
Mepo6g00748 1066 FunFam Chromatin-remodeling complex ATPase 192 407 - -
Mepo6g00748 1066 Pfam Helicase conserved C-terminal domain 494 606 IPR001650 -
Mepo6g00748 1066 SUPERFAMILY Homeodomain-like 845 895 IPR009057 -
Mepo6g00748 1066 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 89 1052 - -
Mepo6g00748 1066 FunFam ISWI chromatin-remodeling complex ATPase CHR11 743 841 - -
Mepo6g00748 1066 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 754 844 IPR036306 GO:0003677|GO:0006338|GO:0031491
Mepo6g00748 1066 Pfam SNF2-related domain 204 471 IPR000330 GO:0005524|GO:0140658
Mepo6g00748 1066 Coils Coil 999 1030 - -
Mepo6g00748 1066 CDD SF2_C_SNF 492 617 - -
Mepo6g00748 1066 Gene3D iswi atpase 897 929 - -
Mepo6g00748 1066 MobiDBLite consensus disorder prediction 1011 1030 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g00748 Mepo-Chr6 7725966 7735070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g00748 212 633 RAD5 or RAD16-like Gene Family AT1G02670 27.921 5.76e-42 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mepo6g00748 SNF2_N 1.2e-71 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g00748 K11654 - gmx:100809750 1899.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g00748 6 7725966 7735070 Mepo6g00748 6 7725966 7735070 ECH
Mepo1g00803 1 7705154 7713219 Mepo6g00748 6 7725966 7735070 PCT