Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g00722 ATGTATGAAGATGATATTAAAGTATTAAGGAATTTCTCAGCATTTGCTTTGATGGAAAGCATGGCAAGTAATTGGCCACAACCTGAGTGGCATGCACCATGGAGAAACTCCAAGGTCATCATTAGTGCTCACTTTGGATCAGTGAGATCTATTGCAGTTGATCCCAGCAATACATGGTTTTGTACTGATATTGGACTTGGCAAGTGGTGTTCTAAAGCACACAACCTTGCTATTAGCAACAAACATACTTACATGTTTTCTGCTGGTGATGATAAGCAAGTTAAATGTTGGGATCTTGAACAAAATGAGTATAGTGTTTATTGCTTGGCTCTTCACCCCACATTTGACATTTTAGTGACTGGAGGACACGATTCTGTTTGCCGGGTCTGGGACATACGTAGTGAAATGTCGGTTCAAACTCTTTTGGGTCATGATAACACTATCAGCTCTTTGTTTACCCGGCCAACGGACCCTCAAGTTGTCACCAGTTCTCATGATTCTACAATCATGTGGGACCTTAGACATAGTAATTTATTGTTGATTTTTCATATCTTCTTGCAAGCTTTTGCATCTGCATCGGCTTATAATGTTAAAAAGTTCACCCTTCCAGAAGGAAAATTTCAAATCCTTGTCACGATTTTTCGCGATCATGTGATAAACTTGACTTTGTCATATGTTTCAGGTGACAATGGTAGTATGTGGTTCTGGGATTGGAAGAGTGGAAACAATTTCCAGCAATCTCAAACAGTTGTACAACCTGGTTCAATGGACAATGAGGCTGGTATTTATGCTTTAACGTATGATGTCACGGGTACGAGGCTTATATCATGTGAAGCTGACAAGACCATAAAAATGTGGAAAGAAGATGACACTGCCACTCCAGAAACACATCCACTTAACTTCATACCTCCTAATAACATTCGTCAATTCGAGTTACGCGATCGTCATTTATTCTGA 957 0.3971 MYEDDIKVLRNFSAFALMESMASNWPQPEWHAPWRNSKVIISAHFGSVRSIAVDPSNTWFCTDIGLGKWCSKAHNLAISNKHTYMFSAGDDKQVKCWDLEQNEYSVYCLALHPTFDILVTGGHDSVCRVWDIRSEMSVQTLLGHDNTISSLFTRPTDPQVVTSSHDSTIMWDLRHSNLLLIFHIFLQAFASASAYNVKKFTLPEGKFQILVTIFRDHVINLTLSYVSGDNGSMWFWDWKSGNNFQQSQTVVQPGSMDNEAGIYALTYDVTGTRLISCEADKTIKMWKEDDTATPETHPLNFIPPNNIRQFELRDRHLF 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g00722 318 SUPERFAMILY WD40 repeat-like 38 287 IPR036322 GO:0005515
Mepo6g00722 318 PANTHER WD40 REPEAT PROTEINPRL1/PRL2-RELATED 14 62 IPR045241 GO:0000398
Mepo6g00722 318 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 99 134 - -
Mepo6g00722 318 ProSiteProfiles Trp-Asp (WD) repeats profile. 99 140 IPR001680 GO:0005515
Mepo6g00722 318 ProSitePatterns Trp-Asp (WD) repeats signature. 118 132 IPR019775 -
Mepo6g00722 318 PRINTS G protein beta WD-40 repeat signature 85 99 IPR020472 -
Mepo6g00722 318 PRINTS G protein beta WD-40 repeat signature 274 288 IPR020472 -
Mepo6g00722 318 PRINTS G protein beta WD-40 repeat signature 118 132 IPR020472 -
Mepo6g00722 318 SMART WD40_4 134 172 IPR001680 GO:0005515
Mepo6g00722 318 SMART WD40_4 99 131 IPR001680 GO:0005515
Mepo6g00722 318 SMART WD40_4 33 98 IPR001680 GO:0005515
Mepo6g00722 318 SMART WD40_4 249 287 IPR001680 GO:0005515
Mepo6g00722 318 Gene3D - 18 310 IPR015943 GO:0005515
Mepo6g00722 318 Pfam WD domain, G-beta repeat 105 131 IPR001680 GO:0005515
Mepo6g00722 318 Pfam WD domain, G-beta repeat 261 287 IPR001680 GO:0005515
Mepo6g00722 318 Pfam WD domain, G-beta repeat 40 98 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g00722 Mepo-Chr6 7427873 7430994 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g00722 44 196 U-box Gene Family AT2G33340 27.451 6.24e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g00722 K12862 - gmx:100782357 407.527