Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g00690 ATGGGGGATCTTGAAAAAATGGGAAGAGAACTCAAATGTCCAATCTGTTTGGGTTTACTTCATTCCGCAGTTTCACTCACCTGCAATCATCTTTTCTGCAACTCTTGTATTTTTGAGTCTATGAAATCTGCTTCTTCTTGTCCTGTTTGTAAAATTCCATTCACTCGTCGAGAGGTTCGTCCTGCTCCTCACATTGACAACTTGGTCACAATCTACAAAAACATGGAAGCTGCTTCTGGAATCAATTTATTCGGCACTCAAAATCCAACTGCTACCACATCACCAGATGGTGAAATGCAAGGTGGAGGTGATGCTGAGTCTGGTGAGAAAGGAACTGGAGGCCCTCATGAAAATCATGCCGAGGAGGAAAAAACACCCACAAGAAAGAAGTCCAGGAAGAAACTTAAGACAAGCACGATAAGCTTGGAGAAGCTAAAGACTAGCAGGAAAAGTCCGGCTTCTAACCGTGCAAAGCCTTCTTTTCCAGCTAAGAAAAGGGTTCAGGTTCCACAAGATATTCTTTCGGAAACTCCACTAAGGAATTTGAAGACAGGAGGCTCTATTACTCAAGTTAACAAAGAGGGAATACAAGAGGCTTCGATTAAGAGAAATGTAAGGGCAATTGGAAGTGAAAAAAGTGATCAGGTGAAAGAACCATTCTTTTGGTTAAGAGAGGAGCAAGATGGTGAAAGGTTAAGTGCACAAACTGATGAGGATCAAATCATGGAAGGTCCAACACCAACTCCTCCTTCATTCAGTGACCTCAAAGACGCTGATGATGAAAGCCCTTCAAAACAAGCTCCATCAGATGAGGTGCAAAATAATCCATCTGTTGATTTATTTGATAGTGAGTTTTTTGAATGGACGCAAAAGCCATGCTCCCCTGAATTATTTTCAAGTCCCATCAAAACGCAGGTTGAGGATACTGATGAGATTGATGAAAATATAGAGGAATTTGTGGCAGCGACGCAAGAGAATCAAACAAGTGTTGATGCTTGCAATACCAACTTTGAGAATCCCAATGGTAATCAATTGGCTGAAGCGTTGCCACCAGGCATGTCCTCTGAAATTAGAAGTTCTGATGATCTAAATGGAAAAAAGAAGTCTACAAAGAGAAGCAGGAAGGCTAGAGAAAAATCTAGGCAAGACTATATTAGGGAACTAAATTGTCCGATTGATGAAATTAATATGGATGTAGATATAACATCAGAAGTTATTGAGGAGCAACCATTGGACTACAAGCACAAAGCTTCTAACCTGAAAAAGTCTAATAAAAGGGGGAAGAAGGTTTCTTTTGTTACTAGTATAGAATCAACACCTCCAATTGCTTGTACAGTCTCCAATATATTAGGAGTTCAAAACAATGGTGATAGGAAGACAGCTAAAACTTCATATACTTCAGAATCTAAACAAGATAATGAGATGCAATGTCCTGAGAAGATTGCTGGAAAAAGGCAGGTGAGAAGATCTGGAAAACAAAGGCTGGATGTTGTGGATGACCCACCTGAGGATTTAACTTCAGTGCAAAACCAATGCAAAGAGCTTGCTGGATCTGCTTCATCCAGTTTAAGACTGCAGGTGGATGGTAATAGAAACACTGTCAATACTAGAAAAAGAAAAAGCAGTTTGTCCAGAAAATCTACGCCTTGTGTTACAGAAAGGAAGAGTACTAAAAAGTCAAAACTTTCCCCTGAATTCATCTCTAGGACTAAAAATGGTGAGGAAATTAAGCCAACTGAAAGTACCAAGCAATGTACCGATGTCAGGCCTTTGAATGATTCATCCAATGAGAAACACCGTCCGTTGACGAATCAATCAGTTTTAAGGAAATGTGTGAGCCACGTCAAAGAGTATCAATGTGCTTTCTGTCTCTCGTCAGAAGAATCAGAGGCTTCTGGTCCAATGGTGCACTATTTTGATGAAAAACCTGTAACTGCTGATTTTGAAGGAGGACCTAAAGTCATACATTGTCACAGGAATTGCACAGAATGGGCCCCAAATGTGTATTTTGAAGATGATAATGCAATAAATCTTGAAGCAGAAATAAGTAGAAGCCGGAGAATCAAATGTGGTTTTTGTGGACTTAAAGGAGCTGCACTCGGTTGCTTTGAGAAAAGTTGTCGCAGGAGCTTTCACGTTCCTTGTGCTAAGTGGACTCCTGAGTGTCGATGGGATATGGAAAATTTTGTCATGTTATGCCCTCTACATGCTCCCTCCTTGTTGCCGTGTGAAAGTTCAGGATCCCAACACAATAGCAAAAAACATACAGCTAAGAAGGTTAAAATCTGTAGCCGCAAACATGACACTACTAGCCAAAGTCAGATTGCTCATGGATTTCACAGGAAAATTGTGCTGTGCTGTTCAGCTCTGTCTGTGCAGGAGAAGGAAGTGGTTTCTGAATTTGAAAGAGTGTCGAAGGTTACAGTTCTGAAAACTTGGGATTCAGGTGTTACCCATGTAATAGCATCAACAGATGAAAATGGGGCATGTAGAAGGACTCTCAAAGTATTGTTGGGTATTCTGGAGGGAAAGTGGATTCTCAGCATTGAGTGGATCAAAGCTTGCATGAAAGAAACAAGACCTGTTGATGAAGAGCGTTATGAAGTTAATGTTGACATCCACGGAATTAAGGATGGTCCCCGTCTTGGAAGATTAAGAGCAGTGAACAAGCAACCAAAGCTTTTTGATGGCTACAAGTTCTATTTCATGGGAGATTTTATCCCTTCATACAAGGGCTATCTGCAAGACCTTGTGATTGCTGCTGGAGGGATAGTTCTGCATAGAAAACCAGTGTCAGGTGACCAAAATGAAATACCGCCTGCTATGCATCAACACCGAACCCTCATAATCTATAGTCTTGAGCTTCCTGCTAAATCCAATCCTTTGGAAAAGGATGCAATTTTTAGCCAAAGGCGATGTGACGCAGAGGCTTTGGCAAGGCCTACTTGTTCAAAGGTTGCAAGCAATACATGGATTCTGAATTCAATTGCTGGCTGCAAGCTGCAAAGCCTTGCTCAATAA 3021 0.4105 MGDLEKMGRELKCPICLGLLHSAVSLTCNHLFCNSCIFESMKSASSCPVCKIPFTRREVRPAPHIDNLVTIYKNMEAASGINLFGTQNPTATTSPDGEMQGGGDAESGEKGTGGPHENHAEEEKTPTRKKSRKKLKTSTISLEKLKTSRKSPASNRAKPSFPAKKRVQVPQDILSETPLRNLKTGGSITQVNKEGIQEASIKRNVRAIGSEKSDQVKEPFFWLREEQDGERLSAQTDEDQIMEGPTPTPPSFSDLKDADDESPSKQAPSDEVQNNPSVDLFDSEFFEWTQKPCSPELFSSPIKTQVEDTDEIDENIEEFVAATQENQTSVDACNTNFENPNGNQLAEALPPGMSSEIRSSDDLNGKKKSTKRSRKAREKSRQDYIRELNCPIDEINMDVDITSEVIEEQPLDYKHKASNLKKSNKRGKKVSFVTSIESTPPIACTVSNILGVQNNGDRKTAKTSYTSESKQDNEMQCPEKIAGKRQVRRSGKQRLDVVDDPPEDLTSVQNQCKELAGSASSSLRLQVDGNRNTVNTRKRKSSLSRKSTPCVTERKSTKKSKLSPEFISRTKNGEEIKPTESTKQCTDVRPLNDSSNEKHRPLTNQSVLRKCVSHVKEYQCAFCLSSEESEASGPMVHYFDEKPVTADFEGGPKVIHCHRNCTEWAPNVYFEDDNAINLEAEISRSRRIKCGFCGLKGAALGCFEKSCRRSFHVPCAKWTPECRWDMENFVMLCPLHAPSLLPCESSGSQHNSKKHTAKKVKICSRKHDTTSQSQIAHGFHRKIVLCCSALSVQEKEVVSEFERVSKVTVLKTWDSGVTHVIASTDENGACRRTLKVLLGILEGKWILSIEWIKACMKETRPVDEERYEVNVDIHGIKDGPRLGRLRAVNKQPKLFDGYKFYFMGDFIPSYKGYLQDLVIAAGGIVLHRKPVSGDQNEIPPAMHQHRTLIIYSLELPAKSNPLEKDAIFSQRRCDAEALARPTCSKVASNTWILNSIAGCKLQSLAQ 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g00690 1006 MobiDBLite consensus disorder prediction 335 381 - -
Mepo6g00690 1006 SUPERFAMILY BRCT domain 783 877 IPR036420 -
Mepo6g00690 1006 MobiDBLite consensus disorder prediction 454 472 - -
Mepo6g00690 1006 CDD ePHD 620 736 - -
Mepo6g00690 1006 FunFam Breast cancer associated RING 1 614 739 - -
Mepo6g00690 1006 MobiDBLite consensus disorder prediction 583 599 - -
Mepo6g00690 1006 Gene3D BRCT domain 891 998 IPR036420 -
Mepo6g00690 1006 MobiDBLite consensus disorder prediction 551 582 - -
Mepo6g00690 1006 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 81 IPR013083 -
Mepo6g00690 1006 MobiDBLite consensus disorder prediction 219 237 - -
Mepo6g00690 1006 MobiDBLite consensus disorder prediction 110 128 - -
Mepo6g00690 1006 ProSiteProfiles Extended PHD (ePHD) domain profile. 617 737 IPR034732 -
Mepo6g00690 1006 SUPERFAMILY RING/U-box 4 74 - -
Mepo6g00690 1006 Gene3D BRCT domain 779 885 IPR036420 -
Mepo6g00690 1006 MobiDBLite consensus disorder prediction 83 97 - -
Mepo6g00690 1006 CDD BRCT_Bard1_rpt1 783 862 - -
Mepo6g00690 1006 ProSitePatterns Zinc finger RING-type signature. 28 37 IPR017907 -
Mepo6g00690 1006 MobiDBLite consensus disorder prediction 83 170 - -
Mepo6g00690 1006 MobiDBLite consensus disorder prediction 473 501 - -
Mepo6g00690 1006 ProSiteProfiles Zinc finger RING-type profile. 13 51 IPR001841 -
Mepo6g00690 1006 MobiDBLite consensus disorder prediction 141 155 - -
Mepo6g00690 1006 SUPERFAMILY BRCT domain 892 1004 IPR036420 -
Mepo6g00690 1006 SMART ring_2 13 50 IPR001841 -
Mepo6g00690 1006 SMART ring_2 690 736 IPR001841 -
Mepo6g00690 1006 SMART PHD_3 689 737 IPR001965 -
Mepo6g00690 1006 FunFam Breast cancer type 1 susceptibility protein homolog 780 886 - -
Mepo6g00690 1006 FunFam Breast cancer associated RING 1 1 83 - -
Mepo6g00690 1006 MobiDBLite consensus disorder prediction 454 599 - -
Mepo6g00690 1006 SMART BRCT_7 776 859 IPR001357 -
Mepo6g00690 1006 SMART BRCT_7 892 999 IPR001357 -
Mepo6g00690 1006 ProSiteProfiles BRCT domain profile. 890 1006 IPR001357 -
Mepo6g00690 1006 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 2 1003 IPR031099 GO:0006281|GO:0006974
Mepo6g00690 1006 MobiDBLite consensus disorder prediction 219 279 - -
Mepo6g00690 1006 ProSiteProfiles BRCT domain profile. 817 869 IPR001357 -
Mepo6g00690 1006 MobiDBLite consensus disorder prediction 504 532 - -
Mepo6g00690 1006 Pfam BRCA1 C Terminus (BRCT) domain 808 856 IPR001357 -
Mepo6g00690 1006 Pfam Zinc finger, C3HC4 type (RING finger) 12 50 - -
Mepo6g00690 1006 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 614 738 IPR013083 -
Mepo6g00690 1006 Pfam PHD-like zinc-binding domain 658 736 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g00690 Mepo-Chr6 7119280 7124924 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g00690 8 63 RAD5 or RAD16-like Gene Family AT5G22750 37.931 6.38e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g00690 K10683 - gmx:100804958 1266.14