Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g00639 ATGAATAGTAAAGGGCACAGTGGAACATCACTTGCAAGCTTGGAAGCTATGGATTTTCCAAATGAATCCATGTCAGATTCTCCACAGAGAAAGATTGGAAGGGGAAAGATTGAGATCAAAAGGATTGAAAACACGACGAATCGCCAAGTAACTTTCTGCAAAAGAAGAAATGGTTTGTTGAAAAAAGCATATGAACTATCTGTTCTTTGTGATGCAGAAGTTGCTCTTATAGTCTTCTCTAGCCGTGGGCGACTCTATGAATATGCTAACAACAGTGTCAAAGAAACTATTGCAAGGTACAAAAAAGCATGTTCAGATTCATCTGGCACTGGATCTGCTACTGAGGCTAATGCTCAGTTTTACCAGCAAGAGGCAGACAAATTGCGTGTGCAAATTAGTAACCTGCAGAATAACAACAGGCAAATGATGGGTGAATCTTTGGGCTCTATGAATGCCAAGGAACTGAAAAATCTGGAGTCTAAATTAGAAAAAGGAATCAGTAGGATTCGTTCCAAAAAGAATGAGCTGTTATTTGCTGAAATTGAATACATGCAGAAGAGGGAGATAGACTTGCACAATAACAACCAACTTCTGAGAGCAAAGATAGCTGAAAGTGAGAACAGCCACCATAGCAATATTAATATGAGTATGTTGCCTGGAGGCACAAACTATGAATCTATGCAGTCTCAGAATCAGCAGCAGCAATATGAGTCTCGTGGATACTTTCAAGTTTCTGGATTACAATCCAGTAGTAGTCAAATGACTGCATTACAACCAAGTAGTCAGTATGCAAGACAAGACCACATGTCTCTTCAATTAGTGTAA 825 0.3927 MNSKGHSGTSLASLEAMDFPNESMSDSPQRKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKETIARYKKACSDSSGTGSATEANAQFYQQEADKLRVQISNLQNNNRQMMGESLGSMNAKELKNLESKLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAESENSHHSNINMSMLPGGTNYESMQSQNQQQQYESRGYFQVSGLQSSSSQMTALQPSSQYARQDHMSLQLV 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g00639 274 PRINTS MADS domain signature 34 54 IPR002100 GO:0003677|GO:0046983
Mepo6g00639 274 PRINTS MADS domain signature 69 90 IPR002100 GO:0003677|GO:0046983
Mepo6g00639 274 PRINTS MADS domain signature 54 69 IPR002100 GO:0003677|GO:0046983
Mepo6g00639 274 ProSitePatterns MADS-box domain signature. 34 88 IPR002100 GO:0003677|GO:0046983
Mepo6g00639 274 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 41 88 IPR002100 GO:0003677|GO:0046983
Mepo6g00639 274 Gene3D - 44 110 IPR036879 GO:0003677|GO:0046983
Mepo6g00639 274 SMART madsneu2 32 91 IPR002100 GO:0003677|GO:0046983
Mepo6g00639 274 Pfam K-box region 115 202 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mepo6g00639 274 PANTHER SERUM RESPONSE FACTOR HOMOLOG 24 227 - -
Mepo6g00639 274 MobiDBLite consensus disorder prediction 253 274 - -
Mepo6g00639 274 ProSiteProfiles MADS-box domain profile. 32 92 IPR002100 GO:0003677|GO:0046983
Mepo6g00639 274 MobiDBLite consensus disorder prediction 207 237 - -
Mepo6g00639 274 Coils Coil 155 175 - -
Mepo6g00639 274 ProSiteProfiles K-box domain profile. 118 208 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mepo6g00639 274 SUPERFAMILY SRF-like 33 104 IPR036879 GO:0003677|GO:0046983
Mepo6g00639 274 CDD MADS_MEF2_like 33 107 IPR033896 GO:0000977|GO:0045944
Mepo6g00639 274 Coils Coil 118 145 - -
Mepo6g00639 274 FunFam agamous-like MADS-box protein AGL11 44 127 - -
Mepo6g00639 274 MobiDBLite consensus disorder prediction 1 28 - -
Mepo6g00639 274 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g00639 Mepo-Chr6 6524986 6532731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g00639 30 274 MADS-box Gene Family AT3G58780 64.898 4.58e-108 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mepo6g00639 K-box 6.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g00639 K09264 - gmx:732595 387.111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g00639 6 6524986 6532731 Mepo6g00639 6 6524986 6532731 ECH
Mepo2g04065 2 49640103 49646196 Mepo6g00639 6 6524986 6532731 PCT