Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g00610 ATGGAAGAAGCTCAGGGTAGTAGTTTCGATCAGGTGCCTCCTTTTCTGGCTAAGACTTATAATATGGTTGAAGATCCTTCAACTAATGCCATTGTTTCTTGGGGTGCTACCGGTGAAAGTTTTATTGTTTGGAATACACAAGATTTTGAAAAAGATTTGTTGCCTCGATACTTCAACCATAATAACTTCTCAAGTTTCATCAGGCAGCTTAATACCTATGGCTTTAGAAAAATTGGTAGAGGAGGACGATGGGAATTCGCAAACAATGATTTCGTAAGAAATCAAGCTGGTCGTGTGAAGAATATCCATAGGCGAGAAGCGGTTTATAGCCATTCTTTGCAGAATGCTCATGGCCAAGGGGTTGCTGCTCCACTAGTAGAATCCGAACAACAGACATTTAATGCTGCTATTCAAAACCTTAAACACGACATAGAACAAATGTTTCTGGAACTTGAGAGAAAGGAAGAGGAGAGAAAAATGCATGAGATAAATTTACAGTACTCTATGGGTCATTTAAAAACACTGGAAAGGAAACATAAAAGTGTTCTCTCTTCTGTTGGTCAAGTGCTGAAGAAACCTGGGGATGAGTTCGGTATATGTCCGCTGACAAAAACTACAAAGCGAAAAAGGAGGATTCCGAGAAACAATCCTTTTTGTAATGCAGCTAGCATTGAAGATCATGTGGGAACTTCTCATGCAATACACAAAGAAAACGACACGAGTGTGTCTCTTCTATCATTAAACATTGAACGATTGGATCTGCTTGAATCATCAACGGCAATTTGGGAGGAGATTAAAAATGATGTCGGTGCCTCTAATTTTCAAAGTACTCCAAACATAGATTTTGATGACTCAATGAATGATGTTGAAGTTCAGCCCAAGTCACTAGAAGTCGACATGAACTCCATGCCAATGGTAGTTTTTCCTGATCCAATTGCAACTGAGCCGGATGTAGTTGTTATTCCTAATCATGTTGCAACTGAGCCGGATGTAATCGTTGTTCCTAATCCGGTTGCAACTGAACCAGCGGTAATCAATGCTTCCGATTTTGTTGCAGTTGAGCCAACTGTAGCAGTTGTCCCTGATTTTGTTGAACCAAAAGAACAACCCGTCGAAACATACCTGGTTACTACCGATTATAATAATGAATTTTGGGGACAATACTTGCAGGACGAATCGGAAAATGAAGATATACCTAGTCAAGTTGGCCAATATTGGTGGACCAAAAGAGTCTAA 1236 0.3989 MEEAQGSSFDQVPPFLAKTYNMVEDPSTNAIVSWGATGESFIVWNTQDFEKDLLPRYFNHNNFSSFIRQLNTYGFRKIGRGGRWEFANNDFVRNQAGRVKNIHRREAVYSHSLQNAHGQGVAAPLVESEQQTFNAAIQNLKHDIEQMFLELERKEEERKMHEINLQYSMGHLKTLERKHKSVLSSVGQVLKKPGDEFGICPLTKTTKRKRRIPRNNPFCNAASIEDHVGTSHAIHKENDTSVSLLSLNIERLDLLESSTAIWEEIKNDVGASNFQSTPNIDFDDSMNDVEVQPKSLEVDMNSMPMVVFPDPIATEPDVVVIPNHVATEPDVIVVPNPVATEPAVINASDFVAVEPTVAVVPDFVEPKEQPVETYLVTTDYNNEFWGQYLQDESENEDIPSQVGQYWWTKRV 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g00610 411 Pfam HSF-type DNA-binding 15 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mepo6g00610 411 SUPERFAMILY "Winged helix" DNA-binding domain 11 105 IPR036390 -
Mepo6g00610 411 SMART hsfneu3 11 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mepo6g00610 411 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 6 207 IPR027725 -
Mepo6g00610 411 Coils Coil 137 164 - -
Mepo6g00610 411 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mepo6g00610 411 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mepo6g00610 411 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mepo6g00610 411 FunFam Heat stress transcription factor B-4 7 106 - -
Mepo6g00610 411 Gene3D - 8 106 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g00610 Mepo-Chr6 6259903 6261749 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g00610 2 296 HSF AT4G18880 43.624 4.64e-61 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Mepo6g00610 HSF_DNA-bind 4.1e-29 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g00610 K09419 - gmx:100820566 331.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g00610 6 6259903 6261749 Mepo6g00610 6 6259903 6261749 ECH
Mepo6g00610 6 6259903 6261749 Mepo2g04053 2 49520440 49522507 ECH
Mepo2g04053 2 49520440 49522507 Mepo6g00610 6 6259903 6261749 PCT