Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g00608 ATGGCTTCAGGGGCAATTTTCTCATCGCTGCGGCGGCGAAGATCACCAACGTTGGAAGCTTTTCTTGCTCCGGTTGATTTAAGCGACGTTGCTTTGGTTCAAACCCTTGTAACGGTTGTGAATGAGCTTGTGTGTTGTTTTTCAAAGCGTTCATTTTTCTTTCAGAGGAAAAATACTCGTTCTTTGATTAGAAAAGTTGAGGTTTTTCAGGTTCTGTTGGACTATTTGAATGATTCGGGTTCGGGTTCAGGTTCGGTTCTTCCGGCTACTGGGTTGCTTTGTCTGAAAGAGCTTTATTTGTTGCTGTATAGGTCAAAGATTCTGCTTGATTATTGCGCGCAATCGAGTAAGTTGTGGCTTTTGCTTCAAAATCATTCAATTTCGGGTCATTTTCATGATTTGAATCAAGAGATTTCGACGCTTTTGGATGTTTTTCCTGTTAAGGATGTTTGTTTGAGTAAGGATGTTAGGGAACAGGTTGAGCTTTTGTTGAAGCAATCAAGGAGGGCTAAGCTTTTTATTGATATGGAGGATGATGCTCTTAGGGTTCGTTTCTTTGAGTTTCTTGATCAGTTTGAGAATGGGAGGATACCTGATTCGGAAGAATTGCGAAGTTTTTATGTTGATAAGTTGCAGATTATGAATGCTGCTTGTTGTAGAACTGAAATTGAGGCTTTGGAGGAGCAGATTGTTAACCATGAGGGTGATATTGAGCCTACAGTTTCTGTGCTTAAAGGGTTGGTGGCCATGACGCGGTATTGTAGATTTTTGATCTTTGGATTTGAGGAAGATGAGCATGATTTGGAAAATGGAAGCCAGAAGAAGATCAAGAAGGGTTTGATTACTCAAGAAATTGCTGATACATTTTTAACTGTTCCGAAGGACTTTTGTTGCCCGATATCGTTGGATTTGATGAGAGATCCGGTGATTATTTCCACCGGTCAAACTTATGATAGGAGCTCCATTTCTAGGTGGATGGATGAAGGGCACACAACTTGCCCAAAGACAGGTATAACACTTGCTCACACTCGTCTTGTCCCGAATCGTGCCTTGAGGAATTTGATTGTGCAGTGGTGTAGTGCTCATGGAATTCCCCTTGAACCACCAGAGGTGATGGAAGCAATGGGTGAAGCTTTTGCATCTGCTTGTCCCACCAAAGCTGCCCTTGAAGCCAATAGAGCAACTGCAAATCTTCTCATTCAACAGTTAGCTAATGGATCGCAATCTGGAAAGACTATAGCTGCTAGGGAGATTCGATTGCTTGCAAAAACCGGCAGAGAAAATCGCGCTTTCCTTGCAGAAGCGGGAGCAATTCCTTATCTTAGGGACTTGCTTTCGTCGCCTAATTCTGTTGCTCAAGAGAATTCAGTTACTGCATTGCTCAACCTTTCCATATATGACAAGAACAAAAGCCGGATCATGGATGAGGCAAGTTGTCTCGTATCAATTGTTAATGTTTTGAGATTCGGGCATACAACAGAAGCAAGGGAAAATGCTGCTGCAACATTGTTCAGCCTATCAGCAGTCCATGACTATAAGAAGATAATCGCGGACGAGACCGGAGCCGTTGAAGCCCTAGCAGGGCTGTTACAAGATGGGACTTCTAGAGGAAAGAAGGATGCAGTAACAGCTTTGTTCAATCTTTCCACACACACCGAGAATTGTGTTAGAATGATTGAGGCAGGAGCAATAACAGCTCTAGTTGAGGCTTTAGGGAATGAAGGAGTTGCCGAGGAAGCAGCTGGTGCCATAGCTTTGATCGTTCGACAGCCTTTCGGAGCCAAAGCGTTAGTGAATCAGGAAGAGGCAGTAGCTGGATTGATAGGAATGATGCGTTGTGGAACGCCAAGGGGTAAGGAGAATGCAGTCGCAGCATTGCTCGAGTTATGTCGGAGTGGAGGTTCTGCTGCAACTGAAAGGGTGGTTAAGGCACCAGCTATTGCCGGATTACTTCAAACGCTACTATTTACCGGGACAAAGCGAGCTAGACGTAAAGCCGCTTCACTTGCTAGAGTGTTTCAGAGATGTGAAAATGCATCTCTACATTATGGTGGATTAGGTGTAGGCTATGCATTTGCTAGCAATTCAGCTCAAACTAGAGATTCAAGCTTTGCTGCAGGGGATGTTTCAGTACCAATGTCAATCTCTGTACCTGTAATATAG 2163 0.4369 MASGAIFSSLRRRRSPTLEAFLAPVDLSDVALVQTLVTVVNELVCCFSKRSFFFQRKNTRSLIRKVEVFQVLLDYLNDSGSGSGSVLPATGLLCLKELYLLLYRSKILLDYCAQSSKLWLLLQNHSISGHFHDLNQEISTLLDVFPVKDVCLSKDVREQVELLLKQSRRAKLFIDMEDDALRVRFFEFLDQFENGRIPDSEELRSFYVDKLQIMNAACCRTEIEALEEQIVNHEGDIEPTVSVLKGLVAMTRYCRFLIFGFEEDEHDLENGSQKKIKKGLITQEIADTFLTVPKDFCCPISLDLMRDPVIISTGQTYDRSSISRWMDEGHTTCPKTGITLAHTRLVPNRALRNLIVQWCSAHGIPLEPPEVMEAMGEAFASACPTKAALEANRATANLLIQQLANGSQSGKTIAAREIRLLAKTGRENRAFLAEAGAIPYLRDLLSSPNSVAQENSVTALLNLSIYDKNKSRIMDEASCLVSIVNVLRFGHTTEARENAAATLFSLSAVHDYKKIIADETGAVEALAGLLQDGTSRGKKDAVTALFNLSTHTENCVRMIEAGAITALVEALGNEGVAEEAAGAIALIVRQPFGAKALVNQEEAVAGLIGMMRCGTPRGKENAVAALLELCRSGGSAATERVVKAPAIAGLLQTLLFTGTKRARRKAASLARVFQRCENASLHYGGLGVGYAFASNSAQTRDSSFAAGDVSVPMSISVPVI 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g00608 720 SUPERFAMILY ARM repeat 395 673 IPR016024 -
Mepo6g00608 720 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 291 365 IPR013083 -
Mepo6g00608 720 Pfam Armadillo/beta-catenin-like repeat 426 464 IPR000225 GO:0005515
Mepo6g00608 720 SUPERFAMILY RING/U-box 280 365 - -
Mepo6g00608 720 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 521 563 IPR000225 GO:0005515
Mepo6g00608 720 PANTHER U BOX DOMAIN-CONTAINING 57 676 - -
Mepo6g00608 720 SMART Ubox_2 295 358 IPR003613 GO:0004842|GO:0016567
Mepo6g00608 720 FunFam RING-type E3 ubiquitin transferase 368 690 - -
Mepo6g00608 720 Gene3D - 395 671 IPR011989 -
Mepo6g00608 720 Pfam U-box domain 292 362 IPR003613 GO:0004842|GO:0016567
Mepo6g00608 720 SMART arm_5 510 550 IPR000225 GO:0005515
Mepo6g00608 720 SMART arm_5 551 589 IPR000225 GO:0005515
Mepo6g00608 720 SMART arm_5 425 465 IPR000225 GO:0005515
Mepo6g00608 720 Coils Coil 216 236 - -
Mepo6g00608 720 FunFam RING-type E3 ubiquitin transferase 291 366 - -
Mepo6g00608 720 ProSiteProfiles U-box domain profile. 291 365 IPR003613 GO:0004842|GO:0016567
Mepo6g00608 720 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 436 478 IPR000225 GO:0005515
Mepo6g00608 720 CDD RING-Ubox_PUB 293 345 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g00608 Mepo-Chr6 6236396 6241098 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g00608 1 719 U-box Gene Family AT1G29340 68.349 0.0 922
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g00608 - - gmx:100811153 1174.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g00608 6 6236396 6241098 Mepo6g00608 6 6236396 6241098 ECH