LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo6g00582	ATGGAACGTGTTAAAGTGTTTGTTTGGTTTGTTACCTTTTTTGTTCTGTTACATTTGGTGTTAATGGTTGTTGAGGGTAGTCAAAGTCTTCTCTCTCCAAAGGGTGTTAACTATGAAGTGGCTGCTTTGATGTCAATGAAGAATAAGATGAATGATGGGTTGCATGTTATGAATGGTTGGGATATTAATTCGGTTGATCCTTGTACTTGGAACATGGTTGGTTGCTCTTCTGAGGGTTATGTCATTTCCTTGGAAATGGCCAGTGCAGGTTTATCTGGAATAATTTCCTCCGGAATTGGAAATTTGAGTCACCTCCGAACATTGTTATTGCAGAACAATCAGTTATCTGGTCCTATCCCGGCCGAGATAGGAAACCTGTTAGCGCTTCAAACCCTTGATCTTTCCGGGAACCAGCTTGTTGGGAACATTCCGAGTTCTTTGGGCTCTTTGACTCATCTTAGTTACTTGCGGCTCAGCAAAAATAAACTATCCGGACAGATCCCTCAACTTGTTGCTAATCTCACAGGACTTTCATTCTTGGATTTGTCATTCAACAATCTTAGTGGTCCTACTCCAAAAATTTTAGCAAAAGGCTTTAGTATTTCAGGAAACAACTTCCTCTGTACATCAGCCTCAGAAACTTGTATGGGCGGTTCGAAGCCAGTAAATGATACAGGGTCATCTAAGACGGTCAGCCGTCATCACCACGTGGTGCTTTCTGCTGTTATTGGCTTTAGTTGCGCATTTGTAATTTCAGTGATGCTACTCGTCTATTGGTTGCATTGGTACAAATCACGCATCCTCTATTCATCTTATGTGGAGCAAGATTGTGAATTTGGGATTGGTCATCTGAAAAGGTTCTCCTTCCGTGAATTGCAAATTGCTACTGGAAATTTCACTTCAAAAAATATCGTAGGACAAGGTGGTTTTGGTGTTGTATACAAAGGATGCCTTGCAAACAAAATGCTGGTGGCAGTAAAGAGGCTTAAAGATCCTAATTATACTGGAGAAGTGCAGTTTCAAACCGAAGTTGAGATGATTGGCTTGGCTGTACATCGTAACCTCTTGCGTCTTTATGGATTTTGTATGACACCAGAGGAAAGATTACTCGTATATCCGTTCATGCCCAATGGCAGTGTTGCTGATCGCTTAAGAGAGAGTTTCCGGGGAAAACCATGTTTGGATTGGGACAGACGAATGCACATTGCTGTTGGGGCTGCACGCGGGCTTCTATATTTGCACGAACAGTGCAATCCAAAAATAATCCACAGGGATGTTAAGGCTGCAAACATTTTGTTAGATGAAAGTTTCGAAGCTGTGGTGGGAGATTTCGGTCTTGCTAAGCTCTTAGATCAAAGGGATTCACATGTAACTACTGCGGTACGTGGCACTGTAGGACACATTGCCCCCGAGTATCTCTCAACTGGACAGTCTTCTGAAAAAACAGATGTTTTTGGATTTGGCATATTACTCTTGGAGCTCATAACAGGACAAAAAGCACTGGATGCCGGAAATGTTCAGGTCCAAAAGGGAATGATTCTTGATTGGGCCAGAACTTTATTTGAAGAGAAGCGGCTGGAAGTGTTGGTTGACAGGGATCTAAAAGGATGTTATGATCCGGCAGAGTTAGAGAAAGCGGTCGAGTTATCTTTGCAGTGTACTCAATCTCTTCCTAGTTTGAGGCCAAAGATGTCAGAAGTTTTGAAGATTCTTGAAGGTCTTATTGGATTGTCAGTGAGGCCAGAGGAATCACAAGGAGGGGGTAGCCTATATGATGAAAGGACTCATAGTTTCTCTCAAAATTATAGCGATGTTCATGAAGAACCTTCCTTTATTATTGAAGCCATTGAACTTTCTGGACCTAGGTGA	1869	0.4211	MERVKVFVWFVTFFVLLHLVLMVVEGSQSLLSPKGVNYEVAALMSMKNKMNDGLHVMNGWDINSVDPCTWNMVGCSSEGYVISLEMASAGLSGIISSGIGNLSHLRTLLLQNNQLSGPIPAEIGNLLALQTLDLSGNQLVGNIPSSLGSLTHLSYLRLSKNKLSGQIPQLVANLTGLSFLDLSFNNLSGPTPKILAKGFSISGNNFLCTSASETCMGGSKPVNDTGSSKTVSRHHHVVLSAVIGFSCAFVISVMLLVYWLHWYKSRILYSSYVEQDCEFGIGHLKRFSFRELQIATGNFTSKNIVGQGGFGVVYKGCLANKMLVAVKRLKDPNYTGEVQFQTEVEMIGLAVHRNLLRLYGFCMTPEERLLVYPFMPNGSVADRLRESFRGKPCLDWDRRMHIAVGAARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKLLDQRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDAGNVQVQKGMILDWARTLFEEKRLEVLVDRDLKGCYDPAELEKAVELSLQCTQSLPSLRPKMSEVLKILEGLIGLSVRPEESQGGGSLYDERTHSFSQNYSDVHEEPSFIIEAIELSGPR	622

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mepo6g00582	622	SMART	serkin_6	299	575	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mepo6g00582	622	Gene3D	Transferase(Phosphotransferase) domain 1	375	575	-	-
	Mepo6g00582	622	SUPERFAMILY	Protein kinase-like (PK-like)	282	572	IPR011009	-
	Mepo6g00582	622	SUPERFAMILY	L domain-like	38	207	-	-
	Mepo6g00582	622	Pfam	Protein kinase domain	300	569	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mepo6g00582	622	Gene3D	Phosphorylase Kinase; domain 1	269	374	-	-
	Mepo6g00582	622	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	421	433	IPR008271	GO:0004672\|GO:0006468
	Mepo6g00582	622	ProSiteProfiles	Protein kinase domain profile.	299	575	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mepo6g00582	622	FunFam	Somatic embryogenesis receptor-like kinase 1	375	590	-	-
	Mepo6g00582	622	FunFam	Somatic embryogenesis receptor kinase 1	269	374	-	-
	Mepo6g00582	622	PANTHER	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	10	570	-	-
	Mepo6g00582	622	SMART	LRR_typ_2	126	150	IPR003591	-
	Mepo6g00582	622	SMART	LRR_typ_2	102	125	IPR003591	-
	Mepo6g00582	622	SMART	LRR_typ_2	174	197	IPR003591	-
	Mepo6g00582	622	Gene3D	Ribonuclease Inhibitor	36	217	IPR032675	-
	Mepo6g00582	622	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	36	217	-	-
	Mepo6g00582	622	ProSitePatterns	Protein kinases ATP-binding region signature.	305	327	IPR017441	GO:0005524
	Mepo6g00582	622	Pfam	Leucine rich repeat N-terminal domain	37	76	IPR013210	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo6g00582	Mepo-Chr6	5970434	5974248	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo6g00582	44	622	Receptor kinase-like Gene Family	AT5G45780	71.429	0.0	823

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-II	Mepo6g00582		Pkinase	1.3e-42	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo6g00582	-		-	gmx:100810610	1060.83