Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g00568 ATGATTAATGGTTTACTAAAGAAGGTCAATGAAATCAGCACTCTTTGTGGGATAGAAGCATGCGCAATAATCTTTGGTGAAAACAATGCTCAACCAAAGGTTTGGCCACCAGGTCCTGCAACAACAAATGTGTTATCCAAGTTCCTACACTTGCCTGAAATCGAAGGAAGCAAAAATATGGTGGATTTGACAGCTTACTTAAACCAAAGTATAGCGAAATCTCAATTGTTGTTGAGGAAACAAATGGAGGCAAACAAGAAGAATGAATTCGCCCAATTTATTACTAAAGTATTTAGTACTGGACAATATCGTCCCGAGGATGTGAACGTGAATGAACTAAATGACCTGACGGCCTTTATAGATGACAATCTGAAGGAAATTGATTGGAGGTTGCAATCGGCGGAAATTCAATCTCAAGAGGAAGCTGGAAATGGAGCTGAAGATATGAATGGAATAGGGAATGAGGGTAATATGGGTGATGCATCAGGGCTGGTGAATGTAGGAGATATGCAAGCTAATATGGGCCATGGTGCTGAGGTCCAAGGTTTGGATAGCAACATGAATTATGGCATGGAAAGTGATTATCAAGATCCACCTTGGGACTTCTCCATGTTAGCATTTCATGATGTTAATACGGACATAAATGGTCTTTGGTCTAACTAG 663 0.4012 MINGLLKKVNEISTLCGIEACAIIFGENNAQPKVWPPGPATTNVLSKFLHLPEIEGSKNMVDLTAYLNQSIAKSQLLLRKQMEANKKNEFAQFITKVFSTGQYRPEDVNVNELNDLTAFIDDNLKEIDWRLQSAEIQSQEEAGNGAEDMNGIGNEGNMGDASGLVNVGDMQANMGHGAEVQGLDSNMNYGMESDYQDPPWDFSMLAFHDVNTDINGLWSN 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g00568 220 ProSiteProfiles MADS-box domain profile. 1 29 IPR002100 GO:0003677|GO:0046983
Mepo6g00568 220 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 3 29 IPR002100 GO:0003677|GO:0046983
Mepo6g00568 220 CDD MADS_SRF_like 3 62 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mepo6g00568 220 SMART madsneu2 3 37 IPR002100 GO:0003677|GO:0046983
Mepo6g00568 220 Gene3D - 2 74 IPR036879 GO:0003677|GO:0046983
Mepo6g00568 220 SUPERFAMILY SRF-like 3 71 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g00568 Mepo-Chr6 5816522 5817441 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g00568 9 132 Type I MADS-box Gene Family AT5G48670 37.097 1.44e-22 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mepo6g00568 SRF-TF 2.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g00568 - - mtr:25485971 413.305