Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g00566 ATGACTGGGAGGAAGGTTAAACTTGCATACATAACCAATCCATCGAGCAGGAAGGCAAGCTACAAAAAAAGGCAATCTGGTTTACTAAAGAAGGTCAATGAAATCAGCACTCTTTGTGGGATAGAAGCATGCGCAATAATCTTTGGTGAAAACAATGCTCAACCAAAGGTTTGGCCACCAGGTCCTGCAACAACAAATGTGTTATCCAAGTTCCTACACTTGCCTGAAATCGAAGGAAGCAAAAATATGGTGGATTTGACAGCTTACTTAAACCAAAGTATAGCGAAATCTCAATTGTTGTTGAGGAAACAAATGGAGGCAAACAAGAAGAATGAATTCGCCCAATTTATTACTAAAGTATTTAGTACTGGACAATATCGTCCCGAGGATGTGAACGTGAATGAACTAAATGACCTGACGGCCTTTATAGATGACAATCTGAAGGAAATTGATTGGAGGTTGCAATCGGCGGAAATTCAATCTCAAGAGGAAGCTGGAAATGGAGCTGAAGATATGAATGGAATAGGGAATGAGGGTAATATGGGTGATGCATCAGGGCTGGTGAATGTAGGAGATATGCAAGCTAATATGGGCCATGGTGCTGAGGTCCAAGGTTTGGATAGCAACATGAATTATGGCATGGAAAGTGATTATCAAGATCCACCTTGGGACTTCTCCATGTTAGCATTTCATGATGTTAATACGGACATAAATGGTCTTTGGTCTAACTAG 732 0.4071 MTGRKVKLAYITNPSSRKASYKKRQSGLLKKVNEISTLCGIEACAIIFGENNAQPKVWPPGPATTNVLSKFLHLPEIEGSKNMVDLTAYLNQSIAKSQLLLRKQMEANKKNEFAQFITKVFSTGQYRPEDVNVNELNDLTAFIDDNLKEIDWRLQSAEIQSQEEAGNGAEDMNGIGNEGNMGDASGLVNVGDMQANMGHGAEVQGLDSNMNYGMESDYQDPPWDFSMLAFHDVNTDINGLWSN 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g00566 243 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Mepo6g00566 243 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Mepo6g00566 243 PANTHER MADS BOX PROTEIN 4 154 - -
Mepo6g00566 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mepo6g00566 243 SUPERFAMILY SRF-like 1 85 IPR036879 GO:0003677|GO:0046983
Mepo6g00566 243 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mepo6g00566 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Mepo6g00566 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mepo6g00566 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo6g00566 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g00566 Mepo-Chr6 5804991 5806168 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g00566 1 155 Type I MADS-box Gene Family AT5G48670 43.871 2.11e-32 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mepo6g00566 SRF-TF 2.8e-15 No_clan