Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g00548 ATGGATTCTAGCTCTGATATTTCGAGGATACTATTCAATGCCACTTCATATAGATTTGGTGCTTCAAATGAGAATTCAAGAGATGGGTTTGTATCAACAAACTCATTGGTTTTGGATAGTGAGAAAGGAGAACTAGTGAAGTCCCCTACAATAATTAATAGAGAGAAAAAGATTTGTGATACTAACAAAACTTTAGTGGCTTTGAAGAATCATAGGGAAGCAGAAAGGAAGAGAAGAAACAGAATTAATGGTCATCTTGCTAAACTCCGTGCACTAGTGCCCTCCTCTCCAAAGATGGACAAAGCAACCTTACTAGCTGAGGTTATTAGGCAAGTGAAGAATTTGAAAAAAAATTCAGATGAAGCAAGCAAAGGTTATTCAATCCCAACTGATGATGATGAAGTGAAAGTTGAACCATGTGAAAATGGTGGAGTAGATGGATCATTTCTTTACAAAGCATCTATAAGCTGTGATTATCAACCAGAACTTCTATCTGATCTAAGACAAACTCTTGATAAACTTCAACTACAATTGGTAAGGGAAGAAATATCAACTTTGGGAGACAGGGTTAAGAATGAATTTGTCTACACATGTTGTAATGTAGACATTTATGATATTGAACTATGTCAACTTATTGGAAATAATGTTCACCACGAACTGAGTTCTGTACTGGAAAGGGCTTCTACCTCAATGGATTATTCATTAAGAGCACCACGTCTTTGCACACAGATGCAGCAGACATCTACTTTGTCATGCAACCATGAATTTTGCTCTTGTTGA 780 0.3641 MDSSSDISRILFNATSYRFGASNENSRDGFVSTNSLVLDSEKGELVKSPTIINREKKICDTNKTLVALKNHREAERKRRNRINGHLAKLRALVPSSPKMDKATLLAEVIRQVKNLKKNSDEASKGYSIPTDDDEVKVEPCENGGVDGSFLYKASISCDYQPELLSDLRQTLDKLQLQLVREEISTLGDRVKNEFVYTCCNVDIYDIELCQLIGNNVHHELSSVLERASTSMDYSLRAPRLCTQMQQTSTLSCNHEFCSC 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g00548 259 Coils Coil 105 125 - -
Mepo6g00548 259 PANTHER TRANSCRIPTION FACTOR BHLH30 24 246 IPR045847 GO:0003700|GO:0006355
Mepo6g00548 259 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 70 124 IPR036638 GO:0046983
Mepo6g00548 259 Coils Coil 164 184 - -
Mepo6g00548 259 Gene3D - 65 124 IPR036638 GO:0046983
Mepo6g00548 259 CDD ACT_UUR-ACR-like 154 195 - -
Mepo6g00548 259 Pfam Helix-loop-helix DNA-binding domain 70 115 IPR011598 GO:0046983
Mepo6g00548 259 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 66 115 IPR011598 GO:0046983
Mepo6g00548 259 CDD bHLH_AtAIG1_like 61 139 - -
Mepo6g00548 259 SMART finulus 72 121 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g00548 Mepo-Chr6 5640481 5642436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g00548 69 195 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 43.846 1.26e-30 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo6g00548 HLH 3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g00548 - - mtr:11425915 371.703