Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g00425 ATGGCATTTGAGGATTGTTTTTCCCATGAATTGAAAACCATTCCAAATTCCATGTCAGAAGCAGAAGAATCCAATGGTTTTGATTGTAACATCTGTTTAGACTTCGCCAACGAACCGGTAGTCACCCTTTGTGGCCACCTTTACTGCTGGCCTTGCATCTACAAGTGGCTACATGTTCAAAGTGATGATTCTCTTGGATCTGATGAACATCCACAATGTCCTGTATGTAAAGAAAATATATCACATACCACAATGGTCCCATTGTATGGCCGCGGTGGCCACGCTCCATCGAGTGGAAAATCATCTTCTTGTGATGATAATTTTGTACCACCAAGACCAACTGCTTCAGGTGCTCAAGCTCTTTTGGCAACAGCATCTCAAAGTGATCATCATCAGCGACTTCCGTATCGAAATCCTTATCAGGGACAATATTTAAACTCTTCTTCATACCACCAACATGAGGGTGATGCTACTTCACAAATGCATAATCTTGGTGCCTCAATGACCTCAAGATCTCGCCACCATCCCGTCGTTGGAATGTTTGAGGAGATGATTTTTGCCGGAGTAGTCGGACACCCGCCGAATTCTTATCAGATGGTGGGAAATAATAGTTCTAGATTGAGAAGGCAAGAGTTGCAGACTGATAAATTTTTGAACAGAATTTCAAATTTTCTATTTTGCTGTTTTCTTTTGTGTCTTATTGTCTTTTGA 711 0.4135 MAFEDCFSHELKTIPNSMSEAEESNGFDCNICLDFANEPVVTLCGHLYCWPCIYKWLHVQSDDSLGSDEHPQCPVCKENISHTTMVPLYGRGGHAPSSGKSSSCDDNFVPPRPTASGAQALLATASQSDHHQRLPYRNPYQGQYLNSSSYHQHEGDATSQMHNLGASMTSRSRHHPVVGMFEEMIFAGVVGHPPNSYQMVGNNSSRLRRQELQTDKFLNRISNFLFCCFLLCLIVF 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g00425 236 MobiDBLite consensus disorder prediction 89 110 - -
Mepo6g00425 236 SUPERFAMILY RING/U-box 25 89 - -
Mepo6g00425 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 90 IPR013083 -
Mepo6g00425 236 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 17 233 IPR045103 GO:0005783|GO:0006511|GO:0061630
Mepo6g00425 236 ProSitePatterns Zinc finger RING-type signature. 44 53 IPR017907 -
Mepo6g00425 236 SMART ring_2 29 76 IPR001841 -
Mepo6g00425 236 Pfam Zinc finger, C3HC4 type (RING finger) 29 76 IPR018957 GO:0046872
Mepo6g00425 236 ProSiteProfiles Zinc finger RING-type profile. 29 77 IPR001841 -
Mepo6g00425 236 CDD RING-HC_AtRMA-like 27 77 - -
Mepo6g00425 236 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 6 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g00425 Mepo-Chr6 4339622 4341536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g00425 11 222 C3H Transcription Factor Family AT4G27470 41.850 1.81e-42 142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g00425 6 4339622 4341536 Mepo6g00425 6 4339622 4341536 ECH
Mepo2g03284 2 42540063 42541222 Mepo6g00425 6 4339622 4341536 PCT