Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mepo6g00401 | ATGTACATAAGTGGTGGTTCTTCTTCCATGGGAAGGTCTTTTAAGGAATCTCTTAAACTGCTTGAAGCTGATATTCATCATGCCAATACCTTGGCATCTGATTTTCCGAGGGAATATGATGGTGCTTGTCTTCAAATGAGAATGTCATACAGTCCAGCAGCACACCTGTTTCTTTTTCTGGTTCAATGGACAGATTGCAATCTTGCTGGAGCCCTTGGACTGTTAAGAATCCTAATTTACAAGGTGTATGTGGATGGGACTACTACCATGTCTACACATGAAAGAAAAGCAAGTATTAGGGAATTCTATGCGGTCATATATCCGTCTTTGTTACAACTTGAAAAAGGTGTCACTGATGCTGAGGATAAAAAACAGAAGGTTGTATGCATGGAGCGGTATCGTAGAAGAGAAGATGAGGAGCACAAACAATTCTCAGACATAGACTTTGAAAGAGAAGAAGAGTGTGGAATATGTATGGAGATGAATAGTAAGATTGTTTTGCCTAACTGCAACCATGTCATGTGCCTGAAATGTTACCATGAATGGAGAGCAAGATCACAGTCATGCCCCTTTTGTCGTGACAGTCTTAAAAGAGTGAACTCAGGCGATCTCTGGATATTCACCGATAGTAGGGACATAGTAGACATGGAAACAGTAACAAGGGAGAACCTTAGAAGGCTTTTCATGTACATAGATAAGTTACCTTTGATCATACCAGACTCCCTTTTTGACCCTTATGACTCTCACTTAAGATAA | 756 | 0.4021 | MYISGGSSSMGRSFKESLKLLEADIHHANTLASDFPREYDGACLQMRMSYSPAAHLFLFLVQWTDCNLAGALGLLRILIYKVYVDGTTTMSTHERKASIREFYAVIYPSLLQLEKGVTDAEDKKQKVVCMERYRRREDEEHKQFSDIDFEREEECGICMEMNSKIVLPNCNHVMCLKCYHEWRARSQSCPFCRDSLKRVNSGDLWIFTDSRDIVDMETVTRENLRRLFMYIDKLPLIIPDSLFDPYDSHLR | 251 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mepo6g00401 | 251 | ProSiteProfiles | Zinc finger RING-type profile. | 155 | 193 | IPR001841 | - | |
| Mepo6g00401 | 251 | FunFam | RING/U-box superfamily protein | 133 | 202 | - | - | |
| Mepo6g00401 | 251 | SMART | ring_2 | 155 | 192 | IPR001841 | - | |
| Mepo6g00401 | 251 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 130 | 201 | IPR013083 | - | |
| Mepo6g00401 | 251 | PANTHER | RING FINGER PROTEIN 41, 151 | 12 | 249 | - | - | |
| Mepo6g00401 | 251 | ProSitePatterns | Zinc finger RING-type signature. | 170 | 179 | IPR017907 | - | |
| Mepo6g00401 | 251 | Pfam | Zinc finger, C3HC4 type (RING finger) | 152 | 198 | - | - | |
| Mepo6g00401 | 251 | SUPERFAMILY | RING/U-box | 143 | 198 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mepo6g00401 | Mepo-Chr6 | 4133580 | 4138961 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mepo6g00401 | 103 | 210 | C3H Transcription Factor Family | AT5G01960 | 26.549 | 8.33e-06 | 44.7 |