Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g00385 ATGGCGCATGATGGATTTCAATTTCCGACACTGTTTGCTGACGATGATTCCGATGATGAAAAGCTTGCAATGGATATTGAATCGTTTCTCAGCGTTCTTGATGAAGATTGTGTTCCTTCAGAGAGTAGTCCTGAGGATTCTTCACTGAAAGACGTTTCACCTGGTGAGTCTGGGATCCATGATAATTTTTTACTTCAAAATGGGAATTCGTTGCTTGACTCCGAACATGAAAACCAGGGACCTTCATCACGGACCTGCTCTTCCCCAAATGTTTTTGCTGGTGGTTACAGGGACTCGTTCTCTGTTGATGAAAGTGATGAAACTTGCTATGCAGAAAGGGCAGGAGTTTCTGAACATGAGATGCTTTCTTACAGTGTGGGCACAAGTTTTGCTGAGGCAAATTCAAATACTGTAACTGTTTGTAGAGATCATTCGAACCCGAGTCTGTGGAAGGATGACGATTATAGCCAAATCAAGCATGTGGTAGATGATGTGGAATCTGAGCATGCTTCACACAGCTCTATCATTGAGAATGTTGATGGAACTTTTGAAGATTATGGAACAGCTTTGAAAGACACAATTGGAGTTTCTAGGCAGCCAGAAAATGACTCCTGTACATCCTTTGAAATGCCGTTTGTGGATGTTGACATGCCTACACATTTTGGAAATTCAGCTGATTCTACTTTTTGTCAAGGTTCCGATGTTCCTAGTGATTTTAGTGACTACTATTCATCTTTGAATTGTTACCAGGGTATAGATGTTATTCCTGCTGTTACCGGCAGTTCTGGTTATTTTCCTAATGGTGTTGGTTCTGAATTCTGGAAAAATGAAGAGCCGGTGAGGAATATGAAGGTTGAAAAAACGGAATGCTTAACTGATACTACTAATATGATTGGTGGCATGCATTTGAGCACTATCGGTCGGATCCCATTTCACGACAGTCAATTTATGCCAGTAAATAATGAATATCCTTCATTTTTTCCTGGTAATGCTAAATTTGAAGACGGTGAATCAGTGCAACAATCATCTTGTGTTCCATATATTTCTAGTGAAGGCCAGTCATTTAATGTCAAAGCTGAAGGGGATGAAATGGTTATGCCTTACCAAAATACTTTTCACAATGGCAATGCTGGTCTAGAGGTGAAACAATTACCTGGTATTTTCCCTACCACTGGATATCAGAGTTACGATTTTTTCAAGGTGGAGGATAGTGATGCAATTGTAACTACTGAGGATACCAATTATTACCAAGATCTTATTGGTGAAACTGCTAATAAATTTCCGGGAAACATGGGAAATTTGAATTTCAGATCCTTAGACAAATCTCTATCTATTGCCCGAGCATCAATTACCAATGGGAATCAGTATAATTGTAGTATGAGTGAACTAGAGAGTAAACCAAGCGAATGTAAAAGTATTGATTCTCAACTTTCCAAAAGAAGTACCGAGGGATCCAATGATGAAGATGACTGTGATGTTTGCATTATTGAAGACATCAGTCACCCTGCACCTACAAGTCGATCTGCCGAATTCAATTCCCTTAATATGTCACAATCTTCTAGATTTGATTATACCCAACCTTATATGGCAGGTGGCACAAGACCAAAGGCACGCGACGAGCAGTACATATTACGAGCTGCGTTGCAGGATATATCTCAGCCAAAGTCAGAAGTTACTCCACCAGATGGACTCCTGGCTGTTCCTCTTTTACGTCACCAGAAAATTGCCTTATCATGGATGGTTCAGAAGGAAACATCAAGTTTATACTGTTCCGGAGGAATTCTTGCAGATGATCAGGGTCTTGGGAAAACAGTGTCAACTATTGCTTTAATACTAAAGGAAAGGCCTCCATTACTTAAGACGTGCAATAATGCACAAAAAAGTGTATTACAAACCATGGACTTGGATGATGACCCGCTTCCTGAGAATGGTTTAGTGAAGAAGGAATCTACTGTGTGTCAAGATACATCCAATAGAAATGCAACCACAAGTGCGAATTTGTCTCTGCATGCAAAGGGCAGGCCATCTGCGGGAACCCTTGTTGTTTGTCCAACTAGTGTTCTGCGACAGTGGGCCGACGAGCTGCATAATAAAGTAACCTGCAAAGCAAATCTCTCCGTGCTTGTGTACCATGGAAGCAGTCGAACCAAAGATCCTTATGAGCTTGCCAAGTATGATGTTGTTTTGACAACTTATTCAATTGTTAGCATGGAGGTCCCTAAGCAGCCTCTGGTTGACAAAGATGATAAAGATGACAAAGAAAAAGGAATTTATGAAGATCATGCTGTGCCGAATAGGAAAAGAAAATGCCCTCCAAGTTCTAAAAGCGGCAAGAAGGCCTTGAACAGCATGATGCTTGAGGCTGCTGCACGTCCTCTTGCAAAAGTAGCCTGGTTTAGAGTTGTCTTGGATGAGGCCCAAAGTATAAAGAATCACAGAACTCAAGTTGCAAGGGCTTGTTGGGGTCTCCGAGCTAAGCGCAGATGGTGCTTGTCAGGGACTCCAATCCAGAATGCAATTGATGATCTCTACAGTTACTTTAGATTTCTAAGATATGATCCTTATGCCGTGTACACATCATTCTGTTCTACCATCAAGATTCCTATCAATAGAAATCCATCAAAAGGGTATAGAAAGCTACAAGCTGTCTTAAAGACAATCATGTTACGTCGGACAAAAGGTACACTTCTTGACGGGGAACCTATTATATCCTTGCCACCTAAATCTGTGGAGTTGAGAAAAGTGGAATTTTCACTGGAGGAACGTGATTTCTATTCCAAGCTGGAGGCTGATTCACGTGCGCAGTTTCAGGAATACGCTGATGCTGGTACCGTGAAGCAAAACTATGTGAACATTTTATTGATGCTTTTGCGCCTTAGACAAGCTTGCGACCACCCTCTGCTTGTCAAGCGTTACAATTCTACTACTCTCTGGAAATCTTCAGTTGAAACGGCAATGAAGCTTCCTCGGGAAAAACAGTTATTTCTCTTAAAATGTTTAGAGGCTTCCTTGGCCCTCTGTGGTATCTGTAATGATGCTCCTGAAGAAGCTGTTGTTTCAGTCTGTGGTCATGTTTTCTGTAATCAGTGCATTTGTGAACATCTAACTGGTGAGGACAATCAGTGCCCTGCTACAAACTGCAAAACTCGACTTAACATGTCTGCGGTGTTTCCTAAAGCCACGCTGAACAGTTCTATATCTGATCCGGCCTGTGATCATTTACTTGGTTCTGAGGTTGAGGATTCTGAACCTTGTTCTCAGTTTCAGCCATATGATTCTTCAAAAATAAGGGCTGCACTTGAGGTGTTGCAGTCATTGTCTAAGCCACAATGCCATACTTCCCAAAAAAGTCATGTGCAGAGCACTTCTAGGGAAAGTTCTGATTGCAGCTCCACTTCTGCCGATAATGGAAAATCCATTAGTGATGTTCCAGAAAAGAAAGCTGTGTTTATGGAGAAAAGCTCTAATGATTCAGTTGGTTCTCTTGGTGAGAAAGCTATAGTGTTTTCTCAGTGGACAGGGATGCTAGATTTACTTGAAGCATGTCTTAAGGATTCTTCAATTCAGTATAGAAGACTTGACGGAACAATGTCAGTCCTCGCTAGAGATAAAGCTGTTAAAGATTTTAACACACTCCCTGAGGTATCTGTTATGATTATGTCTTTGAAGGCTGCTAGTCTTGGTCTGAACATGGTGGCAGCCTGCCACGTTCTCATGCTAGATCTATGGTGGAATCCTACAACTGAAGATCAAGCCATAGACAGAGCACATCGAATTGGACAGACTCGTCCGGTTACAGTTTTGCGGTTAACTGTCAAAGATACAGTTGAAGACCGTATTTTAGCTCTGCAGCAAAAGAAGAGAACAATGGTTGCATCTGCATTTGGAGAGGATGGAACTAGTGGCCGTCAAACTCGCCTTACAGTGGATGATTTAAAATACTTGTTCATGATGTGA 3957 0.415 MAHDGFQFPTLFADDDSDDEKLAMDIESFLSVLDEDCVPSESSPEDSSLKDVSPGESGIHDNFLLQNGNSLLDSEHENQGPSSRTCSSPNVFAGGYRDSFSVDESDETCYAERAGVSEHEMLSYSVGTSFAEANSNTVTVCRDHSNPSLWKDDDYSQIKHVVDDVESEHASHSSIIENVDGTFEDYGTALKDTIGVSRQPENDSCTSFEMPFVDVDMPTHFGNSADSTFCQGSDVPSDFSDYYSSLNCYQGIDVIPAVTGSSGYFPNGVGSEFWKNEEPVRNMKVEKTECLTDTTNMIGGMHLSTIGRIPFHDSQFMPVNNEYPSFFPGNAKFEDGESVQQSSCVPYISSEGQSFNVKAEGDEMVMPYQNTFHNGNAGLEVKQLPGIFPTTGYQSYDFFKVEDSDAIVTTEDTNYYQDLIGETANKFPGNMGNLNFRSLDKSLSIARASITNGNQYNCSMSELESKPSECKSIDSQLSKRSTEGSNDEDDCDVCIIEDISHPAPTSRSAEFNSLNMSQSSRFDYTQPYMAGGTRPKARDEQYILRAALQDISQPKSEVTPPDGLLAVPLLRHQKIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERPPLLKTCNNAQKSVLQTMDLDDDPLPENGLVKKESTVCQDTSNRNATTSANLSLHAKGRPSAGTLVVCPTSVLRQWADELHNKVTCKANLSVLVYHGSSRTKDPYELAKYDVVLTTYSIVSMEVPKQPLVDKDDKDDKEKGIYEDHAVPNRKRKCPPSSKSGKKALNSMMLEAAARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYTSFCSTIKIPINRNPSKGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKSVELRKVEFSLEERDFYSKLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSTTLWKSSVETAMKLPREKQLFLLKCLEASLALCGICNDAPEEAVVSVCGHVFCNQCICEHLTGEDNQCPATNCKTRLNMSAVFPKATLNSSISDPACDHLLGSEVEDSEPCSQFQPYDSSKIRAALEVLQSLSKPQCHTSQKSHVQSTSRESSDCSSTSADNGKSISDVPEKKAVFMEKSSNDSVGSLGEKAIVFSQWTGMLDLLEACLKDSSIQYRRLDGTMSVLARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVKDTVEDRILALQQKKRTMVASAFGEDGTSGRQTRLTVDDLKYLFMM 1318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g00385 1318 Pfam SNF2-related domain 589 968 IPR000330 GO:0005524|GO:0140658
Mepo6g00385 1318 MobiDBLite consensus disorder prediction 36 64 - -
Mepo6g00385 1318 MobiDBLite consensus disorder prediction 1111 1139 - -
Mepo6g00385 1318 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 899 1317 IPR027417 -
Mepo6g00385 1318 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 553 891 IPR027417 -
Mepo6g00385 1318 Gene3D - 542 633 IPR038718 -
Mepo6g00385 1318 Gene3D - 749 903 IPR038718 -
Mepo6g00385 1318 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 773 903 - -
Mepo6g00385 1318 SUPERFAMILY RING/U-box 1004 1066 - -
Mepo6g00385 1318 CDD DEXDc_SHPRH-like 569 891 - -
Mepo6g00385 1318 Gene3D - 660 748 IPR038718 -
Mepo6g00385 1318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1000 1057 IPR013083 -
Mepo6g00385 1318 MobiDBLite consensus disorder prediction 1111 1140 - -
Mepo6g00385 1318 CDD SF2_C_SNF 1163 1270 - -
Mepo6g00385 1318 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1154 1313 IPR001650 -
Mepo6g00385 1318 SMART ring_2 1007 1045 IPR001841 -
Mepo6g00385 1318 ProSitePatterns Zinc finger RING-type signature. 1022 1031 IPR017907 -
Mepo6g00385 1318 Pfam Helicase conserved C-terminal domain 1163 1260 IPR001650 -
Mepo6g00385 1318 Gene3D - 1066 1317 IPR027417 -
Mepo6g00385 1318 SMART ultradead3 565 868 IPR014001 -
Mepo6g00385 1318 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 658 748 - -
Mepo6g00385 1318 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 642 853 IPR014001 -
Mepo6g00385 1318 MobiDBLite consensus disorder prediction 745 778 - -
Mepo6g00385 1318 SMART helicmild6 1177 1260 IPR001650 -
Mepo6g00385 1318 Pfam Zinc finger, C3HC4 type (RING finger) 1007 1043 - -
Mepo6g00385 1318 MobiDBLite consensus disorder prediction 745 767 - -
Mepo6g00385 1318 ProSiteProfiles Zinc finger RING-type profile. 1007 1046 IPR001841 -
Mepo6g00385 1318 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 451 1317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g00385 Mepo-Chr6 3932698 3942719 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g00385 215 1317 RAD5 or RAD16-like Gene Family AT1G61140 51.712 0.0 997
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mepo6g00385 SNF2_N 6.3e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g00385 - - gmx:100805307 1731.46