Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g00340 ATGGGAAGAACACCTTGTTGTGAGAAGAATAATGGTCTCAAGAAAGGACCATGGACAACTGAGGAGGATCAGAAGCTCATTGATTATATTCAGAAACATGGTTATGGCAATTGGAGGACACTCCCAAAGAATGCAGGTTTGCAAAGATGTGGCAAAAGTTGTCGTCTCCGTTGGACAAACTATCTCCGACCAGATATAAAACGTGGTCGGTTTTCATTTGAAGAGGAAGAGACAATTATTCAGCTTCATAGCATTCTTGGTAACAAGTGGTCCGCAATTGCATCTCGATTACCTGGGAGGACGGACAATGAAATAAAAAACTATTGGAACACACACATTAGGAAAAGGCTTTTGAGAATGGGAATTGATCCAGTGACACATAGTCCTAGACTTGACTTATTGGACCTCTCTTCTATTCTACGTTCATCTCTCTATGGTAATTCATCATCTCAAATGAACAACTTCCAAAATCTCCTTGGCATGCAACAACCACCTTTGCTGAATCCTGAGCTTATAAACTTAGCTTCCTCACTCTTCAGTACCTCATCACATCAACAACATTATAATAATAATAATCAACCTTGTAATCCTCAAATACAGAACCATGTTCCACTTTCACATTTTGTCCAATTTCAAGACCAAGTTCCACAAGTAAATGCCAATGTTAGTACTAATGATTGTACTACCACATTTACTACCCCTTGTGTTTCTTCATTGCCAAATGATTCACATTTGTTTGAACCCAATGTGGATACATATACATCAAATTTCACTGACCTTAGTAATTACCAACAATATTCTGTTCATGATATTGATTGGCACCAAAATAATGGGTTTGGTCTAAGTACCTTAAAAGAGGAGGATTATATCCCTCAATTATCAAACTATAATAATCATTATGGTTCTGATAATCAAAATCTTATGTACTATCAAACTTCAAATCAACTTCTATCAACACCATCATCTTCTAGTCCCACACCTTTGAATTCAAACTCCACGTGTATCATTGGGAGCAACACAGAAGATGAAAGAGAAAGCTATGAAAGTTGTAATAGGTTAAATTTTGAAATCCCTGCACATATTTTAGAAGCCAATGATTTTATGTAA 1107 0.365 MGRTPCCEKNNGLKKGPWTTEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDLSSILRSSLYGNSSSQMNNFQNLLGMQQPPLLNPELINLASSLFSTSSHQQHYNNNNQPCNPQIQNHVPLSHFVQFQDQVPQVNANVSTNDCTTTFTTPCVSSLPNDSHLFEPNVDTYTSNFTDLSNYQQYSVHDIDWHQNNGFGLSTLKEEDYIPQLSNYNNHYGSDNQNLMYYQTSNQLLSTPSSSSPTPLNSNSTCIIGSNTEDERESYESCNRLNFEIPAHILEANDFM 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g00340 368 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Mepo6g00340 368 SMART sant 67 115 IPR001005 -
Mepo6g00340 368 SMART sant 14 64 IPR001005 -
Mepo6g00340 368 FunFam Transcription factor MYB39 70 131 - -
Mepo6g00340 368 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Mepo6g00340 368 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Mepo6g00340 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Mepo6g00340 368 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 244 - -
Mepo6g00340 368 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Mepo6g00340 368 Gene3D - 14 67 - -
Mepo6g00340 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Mepo6g00340 368 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Mepo6g00340 368 FunFam MYB-related transcription factor 14 67 - -
Mepo6g00340 368 CDD SANT 70 113 IPR001005 -
Mepo6g00340 368 CDD SANT 17 62 IPR001005 -
Mepo6g00340 368 Gene3D - 70 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g00340 Mepo-Chr6 3525301 3526768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g00340 1 368 MYB Transcription Factor Family AT4G21440 53.003 3.51e-110 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mepo6g00340 Myb_DNA-binding 6.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g00340 K09422 - gmx:778071 444.506