Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g00301 ATGACATCAACGGCGGCTGAACAGCTTCTTGTGGCTGAACAGCTTATTGAACACTTGAAGTGTCCAATTTCGCTTGAAATTATGTCCGATCCGGTTATCCTCTCGTCTGGTCAGACCTTTGACCGTTCTTCAATTCAACAATGGCTTGACCTAGGTCACCGAAAATGTCCAATCACCAAATTGCCTCTCCTCCATACTTACCTCATTCCCAATCACGCCATTTGTGCCATCATTTCCAGTTTTGCCCCTCCTCCACCTAAGACTCTTCCCCGCCCTCCCCCTCTCCAAACCGAAGCCCAAACTCTAACCCTAACCCAAACCCTAGTCTCTGCCCTGACCTCTGATGAGGCTCCCACTAACTACAAACTCAACTCACTCAGCAAACTCATTTTTCTCTCCAAGCACGACCCCCTCTTCCGCCGCAACATCACCGACGCCACCGTTATACCAGTTGGCTTCTCATGCCTCGCTGATGAGACCCTCTGCCACAAAGCTCTCACCCTTCTCCTCAACATCAGCCTTGAAGATGAAAACAAGGTTGGCCTAATGGCAGAAGGCATCCTCGACCGTCTCATTCCCATTCTCTCCTCTGAAGTCTCCGACTGTAGCGCTGTGGCAGCAACCCTTATCACTAGTTTGGCTCTCTTGGAACTAAACAGGGCAACGATCGGGGCATACCCACATGCTATTGAATCTCTGGTTTCTCTCATTCGCGATGGTGTTGGTAGAGAGAAAAAAGAAGCAGCTACTGCACTCTACACTCTCTGTCGTTTTCCAAATAATCGAGTAACCGCTGTGGCATGTGGAGCTGTACCAGTTTTGCTTCGAAGGCTCGATGCAGGTCTCGAACGGTGTGTTGAGGTTATTGGGTTATTGGCTGAGCGCAAAGAAGCAATAGAAGAGATGGAAAAGTTTGGTGGGTGTGTTGAGGTTCTTGCTGGTGTTCTGAAGAATAGAACTAGAAGTAGAAGAGGGGTTGAGTTTGCTCTTTTGGCTTTGAAATATCTCTGTTGTAACAGTGAAGAAAGTGTTATGGAAGCTGTTCGTGCTGGGGTTTTCGAAAGTTGCATGGGGTTGATGCAACATGGTAGTGTCAGAGTTAGGGAAAATGCTTCTTATTTGATCCTGGTTCTGTGCCCAAGGAAGCAATGA 1152 0.4809 MTSTAAEQLLVAEQLIEHLKCPISLEIMSDPVILSSGQTFDRSSIQQWLDLGHRKCPITKLPLLHTYLIPNHAICAIISSFAPPPPKTLPRPPPLQTEAQTLTLTQTLVSALTSDEAPTNYKLNSLSKLIFLSKHDPLFRRNITDATVIPVGFSCLADETLCHKALTLLLNISLEDENKVGLMAEGILDRLIPILSSEVSDCSAVAATLITSLALLELNRATIGAYPHAIESLVSLIRDGVGREKKEAATALYTLCRFPNNRVTAVACGAVPVLLRRLDAGLERCVEVIGLLAERKEAIEEMEKFGGCVEVLAGVLKNRTRSRRGVEFALLALKYLCCNSEESVMEAVRAGVFESCMGLMQHGSVRVRENASYLILVLCPRKQ 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g00301 383 ProSiteProfiles U-box domain profile. 14 88 IPR003613 GO:0004842|GO:0016567
Mepo6g00301 383 SMART Ubox_2 18 81 IPR003613 GO:0004842|GO:0016567
Mepo6g00301 383 Pfam U-box domain 17 81 IPR003613 GO:0004842|GO:0016567
Mepo6g00301 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 83 IPR013083 -
Mepo6g00301 383 FunFam RING-type E3 ubiquitin transferase 15 85 - -
Mepo6g00301 383 SUPERFAMILY RING/U-box 13 81 - -
Mepo6g00301 383 SUPERFAMILY ARM repeat 101 379 IPR016024 -
Mepo6g00301 383 PANTHER U BOX DOMAIN-CONTAINING 17 375 - -
Mepo6g00301 383 CDD RING-Ubox_PUB 17 68 IPR045210 -
Mepo6g00301 383 Gene3D - 90 383 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g00301 Mepo-Chr6 3080829 3082199 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g00301 11 378 U-box Gene Family AT4G21350 49.326 2.27e-111 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g00301 - - vvi:100852694 377.867