Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g00272 ATGAGTTCTCATATGGAGATTTCATCTATCAGAGGGTTACCTGAAATGGGGATAATGGAGGATCCTAACTTTCTGCATCACTTTAATAATCACCTAAACTCTATTGATACCAATAACTTAACTGCTTCTGCTTTTGGAGATGCTTTACAAAAACATATTTTGTCCAATAATCCAAACTTCAACAACAAAACATGCATGGAGACTTCGCCTACCGGAAATGAAAGACCAACGAAACAGTTAAGAAATAACAGCTGGAATTACAACAATAGTCCTCCAACATCAGATACACAATATGATAATTGTTGCTCTAATAATCTTCTTTCATTTGCTGATTTGAATTACACAAATCAGTTGGGACTATTGAAGCCTAAGTCTGAGATGGTGTGTCCGAAAATCGATAACACTAGTACTCTTGCAAACATGTTGATCACTCAAGGTAACTTGTTTGGGAATCAAAACCATGTCTTTAAAGCTGTTCAAGAGGCTAAAGATATTGAGAATCGTCCTAATAAAATCTCTCAAGCTCATGATCACATAGTAGCAGAAAGGAAGCGTCGCGAGAAGCTCAGCCAACGATTCATCGCTCTGTCTGCTCTTGTTCCAAACCTAAAGAAGATGGACAAAGCTTCTGTTCTTGGAGAAGCTATAAGGTACTTAAAGCAAATGGAAGAGAAAGTGAGTGTTCTTGAGGAGGAACAGAAAAGGAAGAAAACTGTGGAATCTGTTGTAATAGTGAAGAAATCTCAACTTTCTGTTAATGATGCTGAAAACTGTTGTTCAGACACTGATAGTACTTATGATGAGACATTACCTGAAATTGAAGCAAGATTTTGTGAAAGAAGTGTCCTCATAAGGCTACATTGTTTGAAAAGTCAAGGAGTTATTGAGAAAATTATGAGTGAAATTGAGAAACTTCATCTAAAAGTCATCAATAGCAGTTCCTTGACTTTTGGAAATTTCACCCTTGATATAACCATCATTGCTCAGATGGATGCAGGATTTTGTATGACGGTGAAGGATCTTGTGAGGAAGCTACGTTCAGCATATTCATCTTTCATGTGA 1062 0.3682 MSSHMEISSIRGLPEMGIMEDPNFLHHFNNHLNSIDTNNLTASAFGDALQKHILSNNPNFNNKTCMETSPTGNERPTKQLRNNSWNYNNSPPTSDTQYDNCCSNNLLSFADLNYTNQLGLLKPKSEMVCPKIDNTSTLANMLITQGNLFGNQNHVFKAVQEAKDIENRPNKISQAHDHIVAERKRREKLSQRFIALSALVPNLKKMDKASVLGEAIRYLKQMEEKVSVLEEEQKRKKTVESVVIVKKSQLSVNDAENCCSDTDSTYDETLPEIEARFCERSVLIRLHCLKSQGVIEKIMSEIEKLHLKVINSSSLTFGNFTLDITIIAQMDAGFCMTVKDLVRKLRSAYSSFM 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g00272 353 Pfam Helix-loop-helix DNA-binding domain 178 223 IPR011598 GO:0046983
Mepo6g00272 353 PANTHER BHLH TRANSCRIPTION FACTOR 43 350 - -
Mepo6g00272 353 MobiDBLite consensus disorder prediction 67 96 - -
Mepo6g00272 353 CDD bHLH_AtNAI1_like 173 248 - -
Mepo6g00272 353 Coils Coil 212 239 - -
Mepo6g00272 353 Gene3D - 170 246 IPR036638 GO:0046983
Mepo6g00272 353 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 173 222 IPR011598 GO:0046983
Mepo6g00272 353 SMART finulus 179 228 IPR011598 GO:0046983
Mepo6g00272 353 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 178 236 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g00272 Mepo-Chr6 2626631 2629222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g00272 173 353 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 56.284 4.73e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo6g00272 HLH 9.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g00272 - - gmx:100798018 476.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g00272 6 2626631 2629222 Mepo6g00272 6 2626631 2629222 ECH
Mepo2g03423 2 43940175 43942148 Mepo6g00272 6 2626631 2629222 PCT