Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g00248 ATGGGAAGAGGAAAGATTGCAATTAGAAGGATTGACAATTCAACAAGCAGGCAAGTGACTTTCTCAAAAAGAAGAAATGGATTGTTGAAGAAAGCAAAAGAGTTATCCATTCTTTGTGATGCTGAAGTTGGATTGATTGTCTTTTCCAGCACTGGAAAGCTTTATGATTATTCAAGCACTAGTATGAAATCTGTTATTGAGCGCTACAACAAACAGAAAGAGGAACAACATCAGCTAATGAATCCAGCTTCAGAAGTTAAGTTTTGGCAGACAGAAGCAGCAACCCTGAGACAGCAACTACAGTACCTGCAAGAAAGCCATAGGCAATTGATGGGTGAAGGACTTTCTGGGTTGGGTATTAAAGAACTACAGAATCTGGAAAACCAACTGGACATTAGCCTGAAGGGTGTTCGAATGAAAAAGGATCATATCTTGACCAATGAGATTAAAGAACTGCACCAAAAGGGAAATCTTGTCCATCAAGAAAATGTAGAACTCCATAAAAAGATGGATCTCGTCCAAAAAGAAAATGCAGAGCTACTGAAGAAGGTTTATGAAGCAAGGAGTACAAATGAAGAAAATGCAGCAACCAATCTTTCATGCACTATCAGAAATGGATTTGATTTACATGCACCTATCAGTCTCCAGCTAAGCCAGCCACAGCCTCAATACAGTGAACCAGCAGCCAAAGTCATGAAATTAGGATTACAGCTGCATTAA 720 0.3917 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIVFSSTGKLYDYSSTSMKSVIERYNKQKEEQHQLMNPASEVKFWQTEAATLRQQLQYLQESHRQLMGEGLSGLGIKELQNLENQLDISLKGVRMKKDHILTNEIKELHQKGNLVHQENVELHKKMDLVQKENAELLKKVYEARSTNEENAATNLSCTIRNGFDLHAPISLQLSQPQPQYSEPAAKVMKLGLQLH 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g00248 239 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mepo6g00248 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mepo6g00248 239 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mepo6g00248 239 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
Mepo6g00248 239 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mepo6g00248 239 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Mepo6g00248 239 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 171 - -
Mepo6g00248 239 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Mepo6g00248 239 FunFam AGAMOUS-like 21 13 87 - -
Mepo6g00248 239 Coils Coil 163 183 - -
Mepo6g00248 239 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mepo6g00248 239 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mepo6g00248 239 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo6g00248 239 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mepo6g00248 239 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g00248 Mepo-Chr6 2364917 2396868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g00248 1 239 MADS-box Gene Family AT2G14210 62.500 1.63e-93 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mepo6g00248 K-box 5.8e-26 No_clan