Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g00214 ATGGGGTTGCAATTGCATCATAGAAAATTGATGGCAAAATTATGTCAAACAATATGTCACACAAATTGTTCATCAGGCAAAAATTGCACTGCTTGCTTCAATTTCTGTATAACCAGTCCACAAATCCCTTATTACTTTCCTCCATCACCACCACCACCACAACAACAACAACAAGATCACCACAAAATCAACAATTACTTCATCCTCACGCTTTCTCTTCTTGCTTTTGCTTTTTTTCTTGTTTGTATTCGTGCAATTTATATCAGTTTCAGGTCAAGAAGAAGAAGAAGCAGCTTAAGGGCACAACCATCATCAACAACTCAACAAAATGATAGGAATTTTGATGATGAAGAACAACAGCATCAACATGGATCTGTGGTGGATCATCCTATTTGGTATATTCGAACCTTAGGTCTTCATCAATCTGTTATCAATGCAATTAGTGTTTGTAAGTATAAGAGAGGTGAAGGTTTGATTGAAGGAACTGAATGTTCTGTTTGTTTGAGCGAGTTTGAAGAAGATGAGAATCTTAGACTTTTACCAAAGTGTCATCATGCTTTTCATTTACCTTGTATTGATACTTGGCTTAGGTCACATACTAATTGTCCTATGTGTAGGGCTCCAATTGTTAATAACCCTACGGTTGCTAGGGTTGAGTCTTTGGAGTCTGTTGTTGTTGTTGATGATTCTAGTTCAAGTTCATTGGAACATACACAAATTGATGTTTTTGATGAAAATAGTGGTGAAAGTGAAACCAATTTAGGGTTTGAAAATAGTGCTTTCGATTCTGAATCGAGGATTAGGGAGGAAAATGAAGGAGGGCAATTTGAGGTATGTGAAAATGAAAGGCAAGTTGTCGATGCGGTTAGTGTTGTTCGGTCTAGAAGATCGGTTTCTATGGATGATTCTTTTGTTGCAAATAACAATCTTGCTCTTGCAACTGTTCTATCTATAGAATCTAATGGTAATGGTGATTCAAGTAAAATGAGTTTCAGTGATGATGCTATTTCAAAGGTTAATGGAAATGAGAATTTGGCAACTACTTCCAAAGGCAGCAGTAGCTTTTCTCTTAGGCCAACAAGATATTTGCAGGGTGTTCCTAGTCCAATGAAGAGGTCAAGTTCGTACAATGGGAAATTTCTTCTGTCTTGGTTTAGCAGCAATCAGAAGAAGCCAAATGATATTTTCAGAAACTTATGA 1200 0.3675 MGLQLHHRKLMAKLCQTICHTNCSSGKNCTACFNFCITSPQIPYYFPPSPPPPQQQQQDHHKINNYFILTLSLLAFAFFLVCIRAIYISFRSRRRRSSLRAQPSSTTQQNDRNFDDEEQQHQHGSVVDHPIWYIRTLGLHQSVINAISVCKYKRGEGLIEGTECSVCLSEFEEDENLRLLPKCHHAFHLPCIDTWLRSHTNCPMCRAPIVNNPTVARVESLESVVVVDDSSSSSLEHTQIDVFDENSGESETNLGFENSAFDSESRIREENEGGQFEVCENERQVVDAVSVVRSRRSVSMDDSFVANNNLALATVLSIESNGNGDSSKMSFSDDAISKVNGNENLATTSKGSSSFSLRPTRYLQGVPSPMKRSSSYNGKFLLSWFSSNQKKPNDIFRNL 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g00214 399 SUPERFAMILY RING/U-box 158 212 - -
Mepo6g00214 399 SMART ring_2 164 205 IPR001841 -
Mepo6g00214 399 MobiDBLite consensus disorder prediction 98 120 - -
Mepo6g00214 399 CDD RING-H2_EL5-like 163 206 - -
Mepo6g00214 399 FunFam RING-H2 finger protein ATL54 139 212 - -
Mepo6g00214 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 214 IPR013083 -
Mepo6g00214 399 ProSiteProfiles Zinc finger RING-type profile. 164 206 IPR001841 -
Mepo6g00214 399 Pfam Ring finger domain 163 206 IPR001841 -
Mepo6g00214 399 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 54 213 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g00214 Mepo-Chr6 2089757 2091212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g00214 71 283 C3H Transcription Factor Family AT1G72220 45.622 1.54e-46 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g00214 - - tpra:123908556 471.085