Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g00148 ATGTCGGATACGGATGAGTTTCGTTGCTTCATTGGTGGCCTTGCATGGTCAACGTCTGATAGAAGATTAAAAGATGCATTTGAAAAGTACGGCAAGCTTGTTGAAGCAAAGGTGGTGGTTGACAAATTCTCTGGGCGTTCTCGTGGTTTCGGGTTTGTCACATTTGATGACAAGGAAGCAATGGAAGAGGCCATTGAGGCTATGAATGGAATTGACTTGGACGGACGGACTATTACTGTTGATAAAGCCCAACCACAAGGATCTAGAGATGATGATGATCGACACCGAGAACGTGGTCGTGACTCACGTGATCGCAATCGTAGCCGAGATTATGGAGGTAGTCGAGGGTCTAATGGCGGTGAATGCTTTAAGTGTGGTAAACCCGGTCATTTTGCAAGGGAGTGCCCCAGTGAAGGAGAACGAGGAGGAAGGTATGGTGGCAGGGAAAGTAGATATAGTGGTGGCTATGGTCCTGATAGGAATGTAGATCGCTCTTATGGTGGGCGCGACAGGGATTCTGGTGGTCGTGACAGAGATGGTGGTGGTCGTGATAGGGATGGCGGTGGACGTGACAGAGATGGGGGTGGACGTGACAGGGATGGGGGTGGACGTGACAGGGATGGCGGTGGGCGTGACAGGGATCGTGATCGTGCTGGACCGTATGAGCGTCGTGGATCTGGAGGCCATCGTTGA 693 0.5137 MSDTDEFRCFIGGLAWSTSDRRLKDAFEKYGKLVEAKVVVDKFSGRSRGFGFVTFDDKEAMEEAIEAMNGIDLDGRTITVDKAQPQGSRDDDDRHRERGRDSRDRNRSRDYGGSRGSNGGECFKCGKPGHFARECPSEGERGGRYGGRESRYSGGYGPDRNVDRSYGGRDRDSGGRDRDGGGRDRDGGGRDRDGGGRDRDGGGRDRDGGGRDRDRDRAGPYERRGSGGHR 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g00148 230 Gene3D - 2 117 IPR012677 -
Mepo6g00148 230 MobiDBLite consensus disorder prediction 85 111 - -
Mepo6g00148 230 CDD RRM2_NsCP33_like 8 83 - -
Mepo6g00148 230 Gene3D - 118 175 - -
Mepo6g00148 230 SMART c2hcfinal6 121 137 IPR001878 GO:0003676|GO:0008270
Mepo6g00148 230 ProSiteProfiles Zinc finger CCHC-type profile. 122 137 IPR001878 GO:0003676|GO:0008270
Mepo6g00148 230 MobiDBLite consensus disorder prediction 163 230 - -
Mepo6g00148 230 MobiDBLite consensus disorder prediction 127 147 - -
Mepo6g00148 230 Pfam Zinc knuckle 121 137 IPR001878 GO:0003676|GO:0008270
Mepo6g00148 230 SUPERFAMILY Retrovirus zinc finger-like domains 103 141 IPR036875 GO:0003676|GO:0008270
Mepo6g00148 230 SUPERFAMILY RNA-binding domain, RBD 4 115 IPR035979 GO:0003676
Mepo6g00148 230 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 79 IPR000504 GO:0003723
Mepo6g00148 230 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Mepo6g00148 230 MobiDBLite consensus disorder prediction 76 230 - -
Mepo6g00148 230 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 1 226 - -
Mepo6g00148 230 SMART rrm1_1 8 81 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g00148 Mepo-Chr6 1532232 1534852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g00148 9 84 Eukaryotic Initiation Factors Gene Family AT1G71770 34.211 2.29e-07 49.3