Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g00093 ATGGAAGAGGGAAAACATAAATCTAGGAAAGAAGATGCTGATTCCAAGAGGAGTCATCGTAGTGATCGAGATCGTAAGGATCGAAGCAGTGATGGTAGTAGGCACAAGGACAAGAGGGATCGTGAATCTCGAAGGCATGATAGAGAGAAAAGTACTGACTCTGATGAGAAGCATGACAGAGATAGGGAGAAGAGGAGGGAGAGTAAAGAGAAGGACCGGGCACGTGTTCATGATGTTGAACGAGAAAAACAGAGGGAGAAGAAGAGGGAAAGAGAGAGGGAGGAGAAGGAAAAGGAGAGAGTGAGAGAGAAAGAAAGAGAGAGGGAAGAGAAGGAGAGGGAGAGATTAAGGGAGAAGGAAAGAGAGAGGGAGAGAAAGGAGGAGAAGGAGAGGATTAGAGAGAAAGAGAGAAGGGAGAGGGAAAGGAGGGATTATGAGAGAGAGAAGGAAAAGGAAAAAGAAAAAGAGAGAGATAGAGGCAGGAGAGTACGGGAGAGGGAGAAGCATCGGGATGTTGATAGTGAAAATAGTGATGGGGAATTGAGGGAGAGAAATCGGAAGCGGCATAAGAAAGATGATGACGATTACAAGAGGCGAGAGAAGGAAAAGAGTTCGGGAAAGTCAAGTAGGAAAACTGAGGGGGTTGATTGGAGTCCTAGGAGAAAGAGCGATGGAGATGACTCGGATTCTAAAGAGAAAGCAAAGAAACAGACCCGTGAGGAGGAGATGGAAGAGGAACAAAAGAGGTTGGATGATGAAATGGAAAAGCGAAGGAGGAAAGTTCAAGCGTGGCAAGAGCTAAGGAGGTTGGAGGAAGAGGCACAGAGAAAAAAACAAGGTGAAGCAAGTGTTGTTGAACCTGAGTCTGGAAAGAAATGGACACTTGATGGGGAGGAATCCGATGATGAAGATGGAACTGGTAAACATACGAGTATGGATATAGACGAAGACCATAAACTTGCTGATAATGAACCTTCTGATTCAATGGCGGTAGATGTTGACAAGGGAACTGTTGCGTCTGATTTACAGAATGGAGATGCTGGTGCTCCTGTAGAGGATGAAATTGACCCATTGGATGCTTTCATGAATTCTATGGTTCTTCCTGAGGTTGAAAAGCTTAATAATGCTGTTAACTCGGCACCTTCTGATAAAGCTTCTGACTTGAATCCCAAAGATAAAGGGGCTGAGAGTAGAAATGGTGGACAATCAAGGAAAGGTTCAAATAAATCTATTGGCAGGATAATTCCTGGTGAAGAGTCTGATTCAGATTATGCAGATCCTGAAGTTGAAGGCGATCCATTAGATGAAGATGACGATGAGTTCATGAAAAGAGTGAAGAAAACAAAAGCTGAAAAGCTTTCTATTGTTGACCACTCAAAGATTGACTATATACCATTCAGGAAGAATTTCTATATTGAAGTGAAGGAGGTTTCAAAGATGACTGTTGAAGAAGTTGCATTTTACAGGAAGCAGTTAGAGTTGAAGATACATGGAAAGGATGTGCCCAAGCCTGTAAAGTCATGGAATCAAACTGGACTCACTAGCAAAATTTTAGACACAATAAAGAAGGCGAACTTTGAAAAGCCAATGCCTATTCAAGCTCAGGCGTTGCCTGTCATTATGAGTGGTCGAGATTGCATTGGCGTTGCCAAAACCGGGTCAGGTAAAACCCTTGCTTTTGTTCTGCCAATGTTGAGGCATATCAAGGATCAGCCACCAGTTGTTGTAGGAGATGGACCTATTGGGCTTATTATGGCCCCTACAAGAGAACTTGTTCAACAGATTCACAGTGATATAAGGAAGTTCACAAAGGTAATGGGTATCAGGTGTGTTCCTGTCTATGGAGGTTCTGGTGTTGCTCAACAAATCAGTGAGTTGAAACGTGGTACTGAGATAGTAGTTTGTACTCCAGGTAGGATGATTGACATACTGTGCACTAGTAGTGGAAAAATTACTAACCTGCGTAGAGTAACTTATCTGGTCATGGATGAGGCAGATCGAATGTTTGATATGGGTTTTGAACCTCAAATCACAAGAATAGTTCAGAATATTCGGCCAGATCGTCAAACAGTTCTCTTCTCTGCCACTTTCCCCCGCCAGGTTGAAATTTTGGCTCGCAAGGTTTTGAATAAACCTGTTGAAATACAAGTTGGTGGGAGGAGTGTTGTGAACAAAGATATAGCACAGTTAGTTGAGGTGAGGCCAGAAAATGAGAGGTTCCTGAGACTCTTGGAACTACTTGGAGAATGGTATGAGAAAGGAAAGATTTTGGTATTTGTCCATTCACAAGATAAATGTGATGCACTGTTCAAGGATCTAATGAAACATGGTTATCCATGTCTTTCTCTTCATGGGGCTAAGGATCAGACAGACCGTGAATCTACAATATCTGATTTTAAAAGCAATGTCTGCAATTTGCTGGTTGCGACAAGTATTGCTGCCAGGGGATTAGATGTTAAGGAGCTCGAATTGGTGATCAATTTTGATGTTCCAAACCACTATGAAGATTATGTACATCGTGTTGGGCGCACTGGCCGTGCTGGCCGAAAGGGTTGTGCCATCACATTTATTTCTGAAGAAGATGCAAGATATGCACCAGATCTGGTGAAAGCTTTGGAGCTATCTGAGCAGATTGTTCCCGATGATCTGAAATCCCTAGCCGAAGGATTTATGGCAAAAGTGACTCAAGGACTGGAGCAAGCCCATGGGACTGGTTATGGAGGCACTGGCTTTAAATTTAATGAAGAGGAAGATGAGGTCAGGAAAGCAGCGAAGAAAGCCCAAGCCAAAGAATATGGATTTGAAGAAGACAAGTCAGATTCTGAAGATGAAGATGAAGGTATTAGGAAGGCAGGAGGTGATATCTCACATCACCATACTCCAATCTCTGCATCCCAACTGATTCCAATTGGTGGGATACCATCTGTTTCAACAGTCTTGCCTGTGATGGGATCTATTGCTACAAACGATGGGGCTACTCGAGCAGCATTAGCTGCTATGAACCTGCAGCAAAACATAGCAAAAATACAATCTGAAGCATTGCCAGAGCATTATGAGGCTGAGTTGGAAATAAATGATTTCCCCCAGAATGCTCGTTGGAAAGTCACACACAAGGAAACTTTGGGCCCCATTTCTGAGTGGACTGGAGCTGCTATTACTACAAGGGGGCAGTTTTTCCCACCTGGCAAAGTCGCAGGGCCTGGGGATCGTAAACTCTACTTGTTCATTGAGGGTCCTAGTGAACAATCTGTTAAGAGAGCCAAAGCAGAATTGAAACGAGTTTTGGAAGATATCACTCATCAGGCTTTGCAACTACCTGGTGGACCTCAACCTGGCAAATACTCTGTTGTATAA 3354 0.4335 MEEGKHKSRKEDADSKRSHRSDRDRKDRSSDGSRHKDKRDRESRRHDREKSTDSDEKHDRDREKRRESKEKDRARVHDVEREKQREKKREREREEKEKERVREKEREREEKERERLREKERERERKEEKERIREKERRERERRDYEREKEKEKEKERDRGRRVREREKHRDVDSENSDGELRERNRKRHKKDDDDYKRREKEKSSGKSSRKTEGVDWSPRRKSDGDDSDSKEKAKKQTREEEMEEEQKRLDDEMEKRRRKVQAWQELRRLEEEAQRKKQGEASVVEPESGKKWTLDGEESDDEDGTGKHTSMDIDEDHKLADNEPSDSMAVDVDKGTVASDLQNGDAGAPVEDEIDPLDAFMNSMVLPEVEKLNNAVNSAPSDKASDLNPKDKGAESRNGGQSRKGSNKSIGRIIPGEESDSDYADPEVEGDPLDEDDDEFMKRVKKTKAEKLSIVDHSKIDYIPFRKNFYIEVKEVSKMTVEEVAFYRKQLELKIHGKDVPKPVKSWNQTGLTSKILDTIKKANFEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVVVGDGPIGLIMAPTRELVQQIHSDIRKFTKVMGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDIAQLVEVRPENERFLRLLELLGEWYEKGKILVFVHSQDKCDALFKDLMKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLVATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLVKALELSEQIVPDDLKSLAEGFMAKVTQGLEQAHGTGYGGTGFKFNEEEDEVRKAAKKAQAKEYGFEEDKSDSEDEDEGIRKAGGDISHHHTPISASQLIPIGGIPSVSTVLPVMGSIATNDGATRAALAAMNLQQNIAKIQSEALPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQFFPPGKVAGPGDRKLYLFIEGPSEQSVKRAKAELKRVLEDITHQALQLPGGPQPGKYSVV 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g00093 1117 MobiDBLite consensus disorder prediction 922 963 - -
Mepo6g00093 1117 MobiDBLite consensus disorder prediction 922 936 - -
Mepo6g00093 1117 CDD KH-I_AtRH42_like 1015 1116 - -
Mepo6g00093 1117 FunFam probable ATP-dependent RNA helicase DDX17 468 718 - -
Mepo6g00093 1117 Gene3D - 716 890 IPR027417 -
Mepo6g00093 1117 CDD SF2_C_DEAD 727 857 - -
Mepo6g00093 1117 Coils Coil 69 158 - -
Mepo6g00093 1117 CDD DEADc_DDX46 495 716 - -
Mepo6g00093 1117 Gene3D - 459 715 IPR027417 -
Mepo6g00093 1117 PANTHER RNA HELICASE 453 929 - -
Mepo6g00093 1117 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 661 669 IPR000629 -
Mepo6g00093 1117 SMART ultradead3 525 730 IPR014001 -
Mepo6g00093 1117 MobiDBLite consensus disorder prediction 1 329 - -
Mepo6g00093 1117 SMART helicmild6 767 848 IPR001650 -
Mepo6g00093 1117 MobiDBLite consensus disorder prediction 373 439 - -
Mepo6g00093 1117 Pfam DEAD/DEAH box helicase 531 702 IPR011545 GO:0003676|GO:0005524
Mepo6g00093 1117 MobiDBLite consensus disorder prediction 421 437 - -
Mepo6g00093 1117 MobiDBLite consensus disorder prediction 1 356 - -
Mepo6g00093 1117 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 578 864 IPR027417 -
Mepo6g00093 1117 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 743 887 IPR001650 -
Mepo6g00093 1117 Coils Coil 233 263 - -
Mepo6g00093 1117 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 506 534 IPR014014 GO:0003724
Mepo6g00093 1117 Pfam Helicase conserved C-terminal domain 740 848 IPR001650 -
Mepo6g00093 1117 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 537 715 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g00093 Mepo-Chr6 893936 899668 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g00093 493 868 Eukaryotic Initiation Factors Gene Family AT3G19760 32.632 2.97e-58 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g00093 K12811 - gmx:100784306 1498.03