Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g00067 ATGTCTCTCAACCAGCACCAGCACCAGCACCAACAGCAGCAACCATCGCATGTCCACCCTCAAATCTGGCAGACATTAACCGGCACTGCTGTCCAAATACCAAAGTTGCATTCAAGAGTTTACTATTTTCCACAAGGCCACTTAGAATATGCTTCTTCTTCCTCCTCCAATACTCACATATTTCACTCCCTTGATCTTCAACGTTTTCGTCCTTTTACTATCTGTATCATCTCCGCGGTTGATCTCCTCGCCGATCCTCACACTGATGAGGTCTTCGCTAAACTGCTACTCACTCCAATAACCAATGATGCCTGTGTCCAAGATCCTCATGAGGTTCCCAATTGCAACGACGATGATGAGGTAATTGGTTCGTTTACAAGGACTCTCGCCCCTACTAATGTAAGCAAGCATACATTTTACATACCTCGGTTTTGTGCTGAAAATATCTTCCCTCCGCTTGGCATGGAGATTTCTCAATACCTCCTCGTCACTGACGTTCATGGTGAAGTTTGGAAGTTTCACCATGTCTGCCACGGGTTTCCCAAGAGAAACGTGTTTTATATCTCTGAATGGGCTTCGTTTGTTAAGAGGAAGAAACTCGTCGTCGGAGATGCTGTTGTTTTCATGAAAAACTCAACGGGGAAATTATTTGTTGGGATTCGTAGGAACACGCAGTTTGTTGCAGCTGCGGCGGAGCAGAAGAAGAAGGACGAGTTGGAAAAGGAGGTAATGGAAGCAGTGAAGTTGGCGGAAGAGAATAAGCCATTTGAAATTGTTTACTATCCTCGAGGTAATGATTGGTGTGATTTTGTAGTGGATGGTAATGTTGTTGATGAATCAATGAAGATTCAATGGAACCCTAGAATGAGAGTTAAGATGAAGACCGACAAATCTTTAAGGATTCCATATCAAGGGACAATCTCTACTGTATCTCGTTCTTCTAATTTATGGCGCATGCTTCAGGTTAACTGGGATGAATTTCAAGTCTCAAAAATTCCAAGACGAGTCAGCCCGTGTCAATCCAATTCAGCTAAGTCTGTTCAAATTCCTCAACACAATTGGTTGAAGCATGTTAATTCTCACAATAATTTCTCCTCCCAAGCCCAATTTTTTACCTCCAATTTCCTCTTTTCTCTTTCAACTAACAAACCAATCGACGCCGCCGCTACTACCACGTCTATAGTTCGACAAGGTCAAGACGTTCAAAGTTCACAAAGAGCACAGGTTGATAAGGCCTGGTCTGCTCTTTCAAGGCTTCAGTTATCCAGCAGGAGTTATGTCCCAATTGGAAAATCTGTTAAAGTCACTCCTCAGTTTCATGAAAACAGGACAACAACTTCCTTCCAAGGAAGCTATGAGAATCACAAGCTTAACCATCCTGGTTTCGCCGCAGCTCCAACTGTCATTAATCATACTTCTCGGGTTGTAGATAGTTCAGTGAACAATCACACAAAGTACACGAGCCAAACCAACGAGTCTACAAAATGCGTAGCTGATACTATTAATATTGACGACGATGACATACTTGAGAGCATTGATCTTGACCATCTTGACCAAATTGTTGAGAAATACCAGTCCACTTGCACTCCTCAACCTCCAATGTCCAAGTTTCCTCCTTTTACTCCAACGGCAGATAAGGATAATTTTGCCGGACAAGGGGATACTTTTCTGCCACCAGAGCTGTGCTTGGATTGCATCCACGGCTACAAGTTAGGGATTTGCCCTGAAGCAGCAAGTCATTTGCAGGAATTCAAGGATAATCTTATTGCTATCTCTAATGAACTGATTGACAATGTTGAAAATCTCAGTTCTGTGCAGATAGCAAAGCTTCGCCAGGACAGGTCACAGCTGAATAACCAAATTCAACAACTCGAAAAATATATTCATTCCAGTAACCTTGAAGAAGAAAGACAAAAGTCGAATTTTGTTACATCCATGGCACCATCTACGTCTTTTGTGTATGAAACACCCCAACGACCTTTCATCAGTAGTGGACTAAATAGATACGACGACCAGGTTTATATGGATAATGGTACATATGGGACATCATACCAGTCTTCATGCGGCATGCCATCAGGTCCAGTAGAGAGGGAACCATTCATCCCAAAGATTATTGAAGTTAATTACATTGAAGGTTCTGGAGATAAACGGTGGAGCAGCCGAGACTTTTCTTGGACTAAAGAGTTAGAGGTTAATAATAAGAAAGTATTTGGAAATCACTCTTTTCGCCCCAATCAAAGAGAGGTCATTAATGCCACAATGAGTGGGTGTGATGTTTTTGTTTTGATGCCCACTGGTGGAGGAAAAAGCCTGACCTATCAGCTACCAGCTCTTATTAATCCTGGCATAACATTAGTAATTTCTCCCCTTGTGTCCCTTATTCAAGATCAAATAATGCACCTATTGCAGGCAAATATACCTGCTGCTTACTTAAGTGCAAATTTGGAATGGGCTGAACAGCAGGAGATCCTTAGAGAACTTAATTCTGATTACTGCAAATACAAGTTGTTATATGTGACTCCTGAAAAGGTTGCCAGAAGTGACGTTCTTTTGCGACAATTGGAGAGTTTACATGGTCGTGAGTTGCTTTCAAGGATTGTAATTGATGAGGCTCACTGTGTGAGCCAATGGGGGCATGATTTTAGACCAGATTATCAGGGACTTGGTGTTTTGAAACAGAAATTCCCAAATACTCCTGTTTTAGCTTTAACAGCTACAGCAACAGCTAGTGTAAAAGAAGATGTTGTGCAAGCACTTGGTCTTGTTAACTGCGTTGTTTTTCGGCAAAGTTTTAATCGCCCAAATTTATGGTATTCTGTTGTCCCCAAGACCAAAAAGTGTTTGGAGGATATTGATAAATTTATCAGGGAAAATCATTTTGATGAATGCGGCATCATCTACTGTCTTTCACGAATGGACTGTGAAAAGGTCGCTGAAAAATTACAGGAATGTGGGCATAAATGTGCATTTTATCATGGGAGCATGGATCCTGATCAACGTGCTCATGTTCAAAGGCAGTGGAGCAAAGATGAGATCAATATAATTTGTGCTACCGTGGCATTTGGAATGGGGATTAACAAACCTGATGTCCGCTTTGTAATCCATCATTCCCTTCCAAAATCTGTTGAAGGGTATCATCAGGAATGTGGACGGGCTGGTAGAGATGGTCAACGTTCATCCTGTGTATTATATTATAGCTACAGTGACTATATTCGAGTTAAGCATATGTTAAGCGTAGGAGCAGTAGAGCAAAGTAACATGACATCTGGATACAGTCGTTTTAATGCGACAAATTCAGGAAGATTACTGGAAACAAACACTGAAAACCTTTTGCGCATGGTCAGTTATTGTGAAAATGATGTTGATTGTCGGCGCCTTATTCAGCTAGTTCATTTTGGGGAGAAGTTTGATTCTTCAAACTGTCATAAAACATGTGATAATTGCGTGAAGGTCACAAGTTTCGTTGAGAAGGATGTCACCGAAATTGCGAAACAATTGGTTGAACTAGTTAAGCTAACGGGACAGAAGGTCTCAGCATCTCACATATTAGAGGTGTATCGTGGTTCCTTAAGCCAGATGGTCAAGAAACACCGGCATGAGACTGTGCGGCTTCATGGTGCTGGGAAGCATCTAGCAAAGGGCGAGGCTTCCCGTATATTGCATCATCTTGTTGTTGAGGACTTTATTGCGGAAGTGGTAAAGAAAAGTGATTTTTATGGATCTGTATCATCAGTGTTGAAGGTAAATGAGCAGAAGGTCCGTAACATGTTGTTTGGTGGGCAAAGAATTATATTGAGATTCCCGTCTTCTGTGAAAGCTTCAAAGCCTGGCAAATTTGATTCAATTTCAGCCAAAGGTTCTCTGGCATCTGCGAAGCTGAATCTTCCCATTGACATTCCTGACCAACCTGAAACTGAAATAGACTTGGATCTATCAGCTAAGTTGTACACTGCTCTGCGGATGTTGAGGACAACTCTTTGTAGAGAAGCTGGAGAGGGTGTTATGGCTCACCACATATTTGGCAATGCTACGTTGCAGCAGATAAGCAAGAAATTACCGAGAACAAAGGAAGAACTTCTTGATATCAATGGCATTAGCAAGACTAAAGTAAGCAAGTATGGGGATCGGTTACTGGAGACCATTGCGAAAACCATAAATGAATACTACAATACGGATAAAAACAGCAGCGGCAGCAAAGGCAGTGTGGATTCAGCCAAAAGAAGACGAGAAGCAAATAGAACGCCAGATTCAAATGGTGAGGATGATGATGCCTTAATCAAAAGTACTGGTCGCTCCAAGAAAAGGACGGTAAAGAGACAAATTAAAAAGGCTGAGATATATGAATCAGAAGAGGAAGACTATTACCATGGATGCCTTGACGAGGACCTAGACTGTATCGATATTGACAATGTCGTATTAGATAAAGTAACTGGTACAAATGCTGCAGGAAGAGTACTACCTCAATGGACAGCATCATGA 4479 0.4173 MSLNQHQHQHQQQQPSHVHPQIWQTLTGTAVQIPKLHSRVYYFPQGHLEYASSSSSNTHIFHSLDLQRFRPFTICIISAVDLLADPHTDEVFAKLLLTPITNDACVQDPHEVPNCNDDDEVIGSFTRTLAPTNVSKHTFYIPRFCAENIFPPLGMEISQYLLVTDVHGEVWKFHHVCHGFPKRNVFYISEWASFVKRKKLVVGDAVVFMKNSTGKLFVGIRRNTQFVAAAAEQKKKDELEKEVMEAVKLAEENKPFEIVYYPRGNDWCDFVVDGNVVDESMKIQWNPRMRVKMKTDKSLRIPYQGTISTVSRSSNLWRMLQVNWDEFQVSKIPRRVSPCQSNSAKSVQIPQHNWLKHVNSHNNFSSQAQFFTSNFLFSLSTNKPIDAAATTTSIVRQGQDVQSSQRAQVDKAWSALSRLQLSSRSYVPIGKSVKVTPQFHENRTTTSFQGSYENHKLNHPGFAAAPTVINHTSRVVDSSVNNHTKYTSQTNESTKCVADTINIDDDDILESIDLDHLDQIVEKYQSTCTPQPPMSKFPPFTPTADKDNFAGQGDTFLPPELCLDCIHGYKLGICPEAASHLQEFKDNLIAISNELIDNVENLSSVQIAKLRQDRSQLNNQIQQLEKYIHSSNLEEERQKSNFVTSMAPSTSFVYETPQRPFISSGLNRYDDQVYMDNGTYGTSYQSSCGMPSGPVEREPFIPKIIEVNYIEGSGDKRWSSRDFSWTKELEVNNKKVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALINPGITLVISPLVSLIQDQIMHLLQANIPAAYLSANLEWAEQQEILRELNSDYCKYKLLYVTPEKVARSDVLLRQLESLHGRELLSRIVIDEAHCVSQWGHDFRPDYQGLGVLKQKFPNTPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTKKCLEDIDKFIRENHFDECGIIYCLSRMDCEKVAEKLQECGHKCAFYHGSMDPDQRAHVQRQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSVEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMLSVGAVEQSNMTSGYSRFNATNSGRLLETNTENLLRMVSYCENDVDCRRLIQLVHFGEKFDSSNCHKTCDNCVKVTSFVEKDVTEIAKQLVELVKLTGQKVSASHILEVYRGSLSQMVKKHRHETVRLHGAGKHLAKGEASRILHHLVVEDFIAEVVKKSDFYGSVSSVLKVNEQKVRNMLFGGQRIILRFPSSVKASKPGKFDSISAKGSLASAKLNLPIDIPDQPETEIDLDLSAKLYTALRMLRTTLCREAGEGVMAHHIFGNATLQQISKKLPRTKEELLDINGISKTKVSKYGDRLLETIAKTINEYYNTDKNSSGSKGSVDSAKRRREANRTPDSNGEDDDALIKSTGRSKKRTVKRQIKKAEIYESEEEDYYHGCLDEDLDCIDIDNVVLDKVTGTNAAGRVLPQWTAS 1492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g00067 1492 Gene3D - 122 224 IPR015300 -
Mepo6g00067 1492 FunFam ATP-dependent DNA helicase RecQ 715 932 - -
Mepo6g00067 1492 CDD B3_DNA 124 222 IPR003340 GO:0003677
Mepo6g00067 1492 Gene3D - 933 1152 IPR027417 -
Mepo6g00067 1492 SUPERFAMILY DNA-binding pseudobarrel domain 124 222 IPR015300 -
Mepo6g00067 1492 SMART hrdc7 1309 1391 IPR002121 GO:0003676
Mepo6g00067 1492 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 864 873 IPR002464 -
Mepo6g00067 1492 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 750 925 IPR014001 -
Mepo6g00067 1492 Pfam B3 DNA binding domain 128 223 IPR003340 GO:0003677
Mepo6g00067 1492 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 931 1199 IPR027417 -
Mepo6g00067 1492 CDD SF2_C_RecQ 933 1065 - -
Mepo6g00067 1492 ProSiteProfiles Rhodanese domain profile. 965 1007 IPR001763 -
Mepo6g00067 1492 SMART helicmild6 975 1056 IPR001650 -
Mepo6g00067 1492 SMART RQC_2 1158 1269 IPR018982 GO:0006260|GO:0006281|GO:0043138
Mepo6g00067 1492 ProSiteProfiles B3 DNA-binding domain profile. 124 224 IPR003340 GO:0003677
Mepo6g00067 1492 Pfam DEAD/DEAH box helicase 744 912 IPR011545 GO:0003676|GO:0005524
Mepo6g00067 1492 Coils Coil 229 249 - -
Mepo6g00067 1492 PANTHER DNA HELICASE RECQ FAMILY MEMBER 713 1400 - -
Mepo6g00067 1492 FunFam Bloom syndrome, RecQ helicase 933 1153 - -
Mepo6g00067 1492 Pfam RQC domain 1155 1271 IPR018982 GO:0006260|GO:0006281|GO:0043138
Mepo6g00067 1492 Coils Coil 607 634 - -
Mepo6g00067 1492 MobiDBLite consensus disorder prediction 1390 1432 - -
Mepo6g00067 1492 SMART B3_2 125 224 IPR003340 GO:0003677
Mepo6g00067 1492 Pfam HRDC domain 1313 1381 IPR002121 GO:0003676
Mepo6g00067 1492 Gene3D HRDC domain 1308 1397 IPR044876 -
Mepo6g00067 1492 CDD DEXHc_RecQ 733 932 - -
Mepo6g00067 1492 Pfam RecQ zinc-binding 1067 1148 IPR032284 -
Mepo6g00067 1492 SUPERFAMILY HRDC-like 1312 1385 IPR010997 GO:0000166|GO:0044237
Mepo6g00067 1492 Gene3D - 283 348 - -
Mepo6g00067 1492 MobiDBLite consensus disorder prediction 1402 1430 - -
Mepo6g00067 1492 Pfam Auxin response factor 246 318 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mepo6g00067 1492 Gene3D - 706 932 IPR027417 -
Mepo6g00067 1492 NCBIfam RecQ family ATP-dependent DNA helicase 734 1209 IPR004589 GO:0004386|GO:0006310
Mepo6g00067 1492 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 950 1111 IPR001650 -
Mepo6g00067 1492 Pfam Helicase conserved C-terminal domain 949 1055 IPR001650 -
Mepo6g00067 1492 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 717 1074 IPR027417 -
Mepo6g00067 1492 Gene3D - 1156 1266 IPR036388 -
Mepo6g00067 1492 ProSiteProfiles HRDC domain profile. 1309 1391 IPR002121 GO:0003676
Mepo6g00067 1492 SMART ultradead3 738 941 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g00067 Mepo-Chr6 630563 644628 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g00067 18 340 B3 DNA Binding Superfamily AT1G77850 35.294 1.18e-61 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mepo6g00067 DEAD 3.5e-18 CL0023