Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g00060 ATGTCTGTTCAGAAGCAACCATCGCATGTGCGTCCAGAAATCTGGCACACATGTGCTAGCGCTGCCGTCAAAATTCCAAAGTTGCATTCAAGGGTTTATTATTTCCCACAAGGTCACCTAGAAAACGCTTATCCTTCTCCTTCTTCTTCCTCCATTACTCACACACACTCTTTACTACAAAGTTTTCGTCCTTTCACTCCTTGTATTGTCTCCGCTGTTGATCTCCTTGCCGATCCTCACACGGATGAGGTCTTTGTTAAACTGCTACTTACTCCAATAACCAACGATGTCCATCTTGAAAACCCTAAAGAAAACTATAAAGAAGTTCCCAATCTCAACGACCGCGATGAAGTTGTTTCGTTTGTGAAGATTCTTACTCGTTCTGATGTTAACAACGCTCGGTCATTCCACATACCTCGCTTTTGTGCCGATAATGTCTTCCCGCCTCTTAACATAGAGGCCGAATCCTCGTCTCAGCACCTGTTAGTCACAGATGTTCATGGTGAAGTTTCAAAGTTTTACCATGTCTGCCGTGGGTTTCCCAAGAGAAACATGTTGTATATCTCTGAATGGAATTCGTTTGTTAAGAGGAAGAAAATCGTGGCCGGAGATTCCGTTATTTTCATGAAAAACTCAACGGGAAAGATATTTGTTGGAATTCGCAGGAACACGCAGTTTGTTGCAGCGGCGGTGGAGCAGAAGAAGGATGAGTTGGAGAAGGCAGTAATGGAGGCAGTGAAGTTGGCAGAGGAGAATAAGCCATTTGAAATTGTTTACTATCCTCGAGGTGATGATTGGTGTGATTTTGTAGTGGATGCTAATATTGTTGATGAATCAATGAAGATTCAATGGAACCCTAGAATGAGGGTTAAGATGAAGATTGATAAATCTTCAAGGATCCCATATCAAGGGACAATCTCTATTGTATCTCGTACTTCTAATTTATGGCGCATGCTTCAGGTTAATTGGGATGAATTTCAAGTCTCGCAAATTCCAAGACGTGTCAACCCGTGGTGGGTTGAGCTTATTTCTCACAAACCTGCACCGACGCCATTTCCCCAAACAAAAAAATTTAGAACTACTCAAAGTTCTGCCCAACTAAGTGATAAAAAGGAAACATTATTGAATGATGATGGTTTTCCTGCTGATGTACAGCGAGTGAGGCATGATCTTGTTTCCATATCAGGTCCTTCAAACATTTTGAATGAGTCAAAAGAATTAAACATGAGTCCTATACATGATAAAGTATCACCTCATCGCCATATTATTTTGAACTCCTCTGAGACTCACAATTGCAAAACCAAAAATAACAGTGATGGTTCAATTATGTTATTTGGTAAGATCATACAGCCTGATGTACGCAATTTTCACAATTGA 1377 0.4081 MSVQKQPSHVRPEIWHTCASAAVKIPKLHSRVYYFPQGHLENAYPSPSSSSITHTHSLLQSFRPFTPCIVSAVDLLADPHTDEVFVKLLLTPITNDVHLENPKENYKEVPNLNDRDEVVSFVKILTRSDVNNARSFHIPRFCADNVFPPLNIEAESSSQHLLVTDVHGEVSKFYHVCRGFPKRNMLYISEWNSFVKRKKIVAGDSVIFMKNSTGKIFVGIRRNTQFVAAAVEQKKDELEKAVMEAVKLAEENKPFEIVYYPRGDDWCDFVVDANIVDESMKIQWNPRMRVKMKIDKSSRIPYQGTISIVSRTSNLWRMLQVNWDEFQVSQIPRRVNPWWVELISHKPAPTPFPQTKKFRTTQSSAQLSDKKETLLNDDGFPADVQRVRHDLVSISGPSNILNESKELNMSPIHDKVSPHRHIILNSSETHNCKTKNNSDGSIMLFGKIIQPDVRNFHN 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g00060 458 ProSiteProfiles B3 DNA-binding domain profile. 121 224 IPR003340 GO:0003677
Mepo6g00060 458 Pfam B3 DNA binding domain 121 223 IPR003340 GO:0003677
Mepo6g00060 458 Gene3D - 118 224 IPR015300 -
Mepo6g00060 458 SUPERFAMILY DNA-binding pseudobarrel domain 116 222 IPR015300 -
Mepo6g00060 458 Gene3D - 283 347 - -
Mepo6g00060 458 SMART B3_2 121 224 IPR003340 GO:0003677
Mepo6g00060 458 Pfam Auxin response factor 245 317 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mepo6g00060 458 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 399 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mepo6g00060 458 Coils Coil 228 251 - -
Mepo6g00060 458 CDD B3_DNA 120 222 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g00060 Mepo-Chr6 581797 586582 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g00060 9 449 B3 DNA Binding Superfamily AT1G77850 35.795 1.88e-90 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mepo6g00060 B3 3e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g00060 - - mtr:120578118 639.802