Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g00056 ATGGAGACTCACTACAATCACACTCTCTTCGAGAGACGCCCCTTTCTCACGTCCAAGGCTCCCGCTGTTAAATGGGTCAAACAATGGGTTCCACAAGATGTTGTTGCCACTGGTGGGAAGTGTATGCTGTTAAGATGGGTAACAGAGGATACCATAAATGCCTTGAAAGAAAAGGAAAAAGAACCATTAGCTCCTGAGCCAGAACCCGAGCCAACCACTGAAGTACTTTTTCTCTGTAGCTATGAAGGCTGTGGAAAGACATTTATAGATGCTGGTGCTTTGAGGAAGCATTCTCACATCCATGGAGAGAGGCAGTTTGTTTGCCATTATGAGGGGTGTGGAAAGAAATTTCTGGACAGCTCAAAGTTAAAAAGACATTTCTTAATTCATACAGGGGAGAGGGATTTTGTGTGTCCTCATGAAGGCTGTGGTAAGGCCTTCTCCTTGGATTTTAACCTGAGGTCTCACATGAAGACACATTCACAAGAGAATTATCATATATGCCCATACCCAGATTGTGGAAAGAGATATGCTCATGAATACAAGCTAAAGAATCACATTGCTTCCCATCATGAAAAGAGTACACCAATAGATGTGCCGATAAAGTATGCAACTCCTCCTTCAGAAAAGCAAACAAAAACTGCTAGACCTTCTGGGGCGACATACGGTTCGGCATCCTCTGATCGCCCATATGCATGTCCTTATGAAGGGTGTGAAAAGGCTTACATTCATGAGTACAAGCTTAAACTGCATTTGAAGAGGGAGCATCCTGGCCACATAAATGATGAAAATGCTATGCATGCTCTGGCTAATAATGCTGAAAATGAAATGGATGAAGCAAGTGATCACGATGCTTATGGTGGAAAACGTTCCAATGGTAAAAGTCAGAAGCAAAGCAGGCCCAAGCCAAACTTGAAAATGCCTCCTTCTAAAGTTGCTCAGCGTAAAGGGTCTACTCCAACCCCCACCACTTTTAATATGGCTAAAAAACCTTGGCCAGTGAAAGAAGAAACTTACGATGAAGACAGTGAAGAAACTGAGGAGGAGGATCGTGACAATGTTGAAGATGGTTGGAGATATGCTGGAAACAACGAAGATGATGATGAGGAAACAGAATATGAAGACTGA 1128 0.43 METHYNHTLFERRPFLTSKAPAVKWVKQWVPQDVVATGGKCMLLRWVTEDTINALKEKEKEPLAPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQFVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKSTPIDVPIKYATPPSEKQTKTARPSGATYGSASSDRPYACPYEGCEKAYIHEYKLKLHLKREHPGHINDENAMHALANNAENEMDEASDHDAYGGKRSNGKSQKQSRPKPNLKMPPSKVAQRKGSTPTPTTFNMAKKPWPVKEETYDEDSEETEEEDRDNVEDGWRYAGNNEDDDEETEYED 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g00056 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 196 IPR013087 -
Mepo6g00056 375 ProSitePatterns Zinc finger C2H2 type domain signature. 233 256 IPR013087 -
Mepo6g00056 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Mepo6g00056 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
Mepo6g00056 375 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 12 354 - -
Mepo6g00056 375 MobiDBLite consensus disorder prediction 197 228 - -
Mepo6g00056 375 ProSitePatterns Zinc finger C2H2 type domain signature. 168 191 IPR013087 -
Mepo6g00056 375 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Mepo6g00056 375 Gene3D Classic Zinc Finger 205 276 - -
Mepo6g00056 375 FunFam zinc finger transcription factor YY1 77 102 - -
Mepo6g00056 375 ProSitePatterns Zinc finger C2H2 type domain signature. 138 160 IPR013087 -
Mepo6g00056 375 Gene3D Classic Zinc Finger 77 102 - -
Mepo6g00056 375 Gene3D Classic Zinc Finger 134 161 - -
Mepo6g00056 375 FunFam zinc finger transcription factor YY1 163 194 - -
Mepo6g00056 375 SMART c2h2final6 136 160 IPR013087 -
Mepo6g00056 375 SMART c2h2final6 166 190 IPR013087 -
Mepo6g00056 375 SMART c2h2final6 231 256 IPR013087 -
Mepo6g00056 375 SMART c2h2final6 77 101 IPR013087 -
Mepo6g00056 375 SMART c2h2final6 106 130 IPR013087 -
Mepo6g00056 375 SUPERFAMILY beta-beta-alpha zinc fingers 80 130 IPR036236 -
Mepo6g00056 375 Pfam Zinc finger, C2H2 type 166 190 IPR013087 -
Mepo6g00056 375 Pfam Zinc finger, C2H2 type 136 160 IPR013087 -
Mepo6g00056 375 MobiDBLite consensus disorder prediction 276 375 - -
Mepo6g00056 375 FunFam Zinc finger protein 410 134 161 - -
Mepo6g00056 375 Gene3D Classic Zinc Finger 103 133 - -
Mepo6g00056 375 Gene3D Classic Zinc Finger 163 195 - -
Mepo6g00056 375 FunFam Zinc finger transcription factor YY1 206 274 - -
Mepo6g00056 375 MobiDBLite consensus disorder prediction 207 225 - -
Mepo6g00056 375 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Mepo6g00056 375 FunFam Putative zinc finger protein 143 103 133 - -
Mepo6g00056 375 SUPERFAMILY beta-beta-alpha zinc fingers 226 254 IPR036236 -
Mepo6g00056 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 231 261 IPR013087 -
Mepo6g00056 375 MobiDBLite consensus disorder prediction 276 290 - -
Mepo6g00056 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Mepo6g00056 375 MobiDBLite consensus disorder prediction 338 352 - -
Mepo6g00056 375 SUPERFAMILY beta-beta-alpha zinc fingers 117 170 IPR036236 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g00056 10 361 C2H2 Transcription Factor Family AT4G06634 65.217 1.32e-148 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo6g00056 zf-C2H2 0.0089 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g00056 - - zju:107412546 615.15