Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g00015 ATGGAGAGTCGGGAAGAGAAAGAGAGATTGGAGATGTGGTCGAATCGAAAGGAGAAGAGGAAGGCATTGAAGAAATTGAAGAGAAAGGAGAGAAGGAAAGAGATTGCTGAGAAGGAACGTTTGGAGGAAGAAGCTCGACTGAACGATCCCGAAGAGGAGAGAAAGAGGTTACTCTTGGAGCAGCAAGAGGCGGAGAGAATCGAAAAGGATAGAATCGATTTCGAAGAGAGAGAGAAAGCTTGGATTATCAAACAACAGCAACAACAACGAGACCTAGAAGAACAAGAACAACAACTATCTCAACGAGACGATATCAAAGAAGAAGAAGAAGAAGAAGAAGAAGATGACGATGATAGTCCTCCGGAGATTATTTGGTTAGGAAATGAAATTATCATCAAAAAGAAGAAAAAGAAAAAGGTGAACCCCAATCCCCTCCTTCTCCTCCACAACCACCAGGAGCAGCATAACCATCATCATAATAGACCTACATCCAATCCCTTTCCCCCGGAATCTCCTTCTCAACCTCTGCACAATGTTGCTCAACAACTACCTAATTTCGGAACTGAACTGGATAAAGCTCACTGCCCCTTCCATCTTAAAACTGCAGCATGTCGTTTCGGTGACCGATGTAGCAGGGTCCATTTCTACCCCGATAAGTCCTGCACCATTCTCATCAAAAACATGTACAATGGTCCCGGTCTTGCTTGGGAACAAGATGAAGGCCTTGAGCATACAGATGAGGAGGTTGAACGCTGTTTTGAAGAGTTTTATGAAGATGTTCACACAGAGTTCCTGAAGTTTGGTGAAATTGTGAACTTCAAGGTGTGTAAAAATGGTTCATTTCACTTGCGAGGAAATGTCTACGTACAGTATAAGTTGTTGGATTCTGCTCTGCTTGCTTATAACTCAGTTAATGGTCGCTACTTCGCTGGGAAACAGGTGAGCTGTAAATTTGTTAATTTAACAAGATGGAAGGTTGCCATTTGTGGCGAGTATATGAAATCAGGTTACAAGACTTGTTCCCATGGAACAGCTTGCAATTTTATCCACTGTTTTCGTAATCCTGGCGGAGACTATGAATGGGCAGATTCTGACAAACCACCCCCGAAATTCTGGGTAAAGGAGATGGTTGCTTTATTTGGTTATTCTGATAATTGTGAGATGTCAAGGGTCCATGGAAATTTTAGTGCGCTGAAGCACTCCAGCAATATCCTAGAAACAGATTCTGACAGGTATCACTCAAGAAGATCAAGATCTAGGGAGATGAGTCAATTATATGGTGGTCGTTCTAGTAGAAGAAAACAGGAAGATGAAAGAACTCTTGATGAGGAATGGAATGTCAACTATAAAGACAATCATAAAAGAAAATACAGGAACACAACTTCTGATTCTGATTCTGACAGGGAAGGGTTAGAAGAGGTAGATAGGAAAAAGTATCATGAACACACTAGGAAAAAGGATAACAATAGCAGAAGGCATGAAGAGTATTCTGATGTGGATAGGGTTACGATAAACAGGGACAATGAAAAGCCGCATGATAGAAAAGGAAGGAACCCACAAAAGTCGAACCGGGATAGTAGGGACTGGATTTATGAGGCTGGATGTGATGAGGATAGAGATGGAGTTGGAAGAAGACACCATAGTAGCCGAAGGAAAGGATCAAGACATCAGAGCAGGGACAACAGTAATGTAACTGATGAATCTGAATCTGACAAAGATAGAGGCCATGAAGAGTATTCTGATGTGGATTGGGATACTATGAGTAGGGACAATGAAAAGCAGCATGGCAGTAATGGAAGGAACTCGCAAAAGTGGAACAGGGATAGTAGGTACCGGATTTATGAGGCTGGATCAGATGAGGATAGACATAGAAAAAGGCACCATAGTAGCCAAAGAAAAGGATCGAGACATCGGAGCAGGGACAACGGTAATGTAGCCAATGAGTCTGAATCTGACAAAGATAGAGGACATGAAGAGTATTCTGATGTGGATCGGGATACTATGAGTAAGGACAATGAAAAGCAGCATGACAGCAAAGGAAGGAACTCACAAAAGTGGAGCTGGGGTAGTAGGTACCGGATTCATGAGGCTGGATCAGATGAGGATAGACATAGAAAAAGGCACCATAGTAGCCAAAGGAAAGGATTGAAACATCAAAGCAGGGACAAGGACAACAGTAAGGTAACTGATAAATCTGAATCCGGCCAAGATAGAGACCATGAAGAGTATTCTGATGTGGATTGGGATACTATGAGTAGGGACAATGAAAAGCAGCTTGACAGCAAAGGAAAGAACTCACAAAAGAGGAATGGAGATAGTAGGTACCAGATTGATGAGGCTGGATCAGATGAGGATAGACATAGAAAAAAGCACCTTAGAAGCCAAATGAAAGAATCTAGACATCAGAGTAGTGACATCGGTTATGGAATTGATGAATTTGACAGATAA 2448 0.4208 MESREEKERLEMWSNRKEKRKALKKLKRKERRKEIAEKERLEEEARLNDPEEERKRLLLEQQEAERIEKDRIDFEEREKAWIIKQQQQQRDLEEQEQQLSQRDDIKEEEEEEEEDDDDSPPEIIWLGNEIIIKKKKKKKVNPNPLLLLHNHQEQHNHHHNRPTSNPFPPESPSQPLHNVAQQLPNFGTELDKAHCPFHLKTAACRFGDRCSRVHFYPDKSCTILIKNMYNGPGLAWEQDEGLEHTDEEVERCFEEFYEDVHTEFLKFGEIVNFKVCKNGSFHLRGNVYVQYKLLDSALLAYNSVNGRYFAGKQVSCKFVNLTRWKVAICGEYMKSGYKTCSHGTACNFIHCFRNPGGDYEWADSDKPPPKFWVKEMVALFGYSDNCEMSRVHGNFSALKHSSNILETDSDRYHSRRSRSREMSQLYGGRSSRRKQEDERTLDEEWNVNYKDNHKRKYRNTTSDSDSDREGLEEVDRKKYHEHTRKKDNNSRRHEEYSDVDRVTINRDNEKPHDRKGRNPQKSNRDSRDWIYEAGCDEDRDGVGRRHHSSRRKGSRHQSRDNSNVTDESESDKDRGHEEYSDVDWDTMSRDNEKQHGSNGRNSQKWNRDSRYRIYEAGSDEDRHRKRHHSSQRKGSRHRSRDNGNVANESESDKDRGHEEYSDVDRDTMSKDNEKQHDSKGRNSQKWSWGSRYRIHEAGSDEDRHRKRHHSSQRKGLKHQSRDKDNSKVTDKSESGQDRDHEEYSDVDWDTMSRDNEKQLDSKGKNSQKRNGDSRYQIDEAGSDEDRHRKKHLRSQMKESRHQSSDIGYGIDEFDR 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g00015 815 MobiDBLite consensus disorder prediction 456 544 - -
Mepo6g00015 815 SMART c3hfinal6 323 352 IPR000571 GO:0046872
Mepo6g00015 815 SMART c3hfinal6 190 216 IPR000571 GO:0046872
Mepo6g00015 815 MobiDBLite consensus disorder prediction 456 815 - -
Mepo6g00015 815 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 179 557 IPR009145 GO:0000398|GO:0003723|GO:0089701
Mepo6g00015 815 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 324 351 IPR000571 GO:0046872
Mepo6g00015 815 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 195 214 IPR000571 GO:0046872
Mepo6g00015 815 MobiDBLite consensus disorder prediction 408 422 - -
Mepo6g00015 815 ProSiteProfiles Zinc finger C3H1-type profile. 323 353 IPR000571 GO:0046872
Mepo6g00015 815 MobiDBLite consensus disorder prediction 605 625 - -
Mepo6g00015 815 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 221 321 IPR000504 GO:0003723
Mepo6g00015 815 Gene3D - 220 319 IPR012677 -
Mepo6g00015 815 SUPERFAMILY RNA-binding domain, RBD 253 321 IPR035979 GO:0003676
Mepo6g00015 815 FunFam Zinc finger CCCH domain-containing protein 5 222 319 - -
Mepo6g00015 815 MobiDBLite consensus disorder prediction 105 122 - -
Mepo6g00015 815 PRINTS U2 auxiliary factor small subunit signature 343 355 IPR009145 GO:0000398|GO:0003723|GO:0089701
Mepo6g00015 815 PRINTS U2 auxiliary factor small subunit signature 195 214 IPR009145 GO:0000398|GO:0003723|GO:0089701
Mepo6g00015 815 PRINTS U2 auxiliary factor small subunit signature 214 234 IPR009145 GO:0000398|GO:0003723|GO:0089701
Mepo6g00015 815 PRINTS U2 auxiliary factor small subunit signature 250 265 IPR009145 GO:0000398|GO:0003723|GO:0089701
Mepo6g00015 815 PRINTS U2 auxiliary factor small subunit signature 278 300 IPR009145 GO:0000398|GO:0003723|GO:0089701
Mepo6g00015 815 PRINTS U2 auxiliary factor small subunit signature 305 329 IPR009145 GO:0000398|GO:0003723|GO:0089701
Mepo6g00015 815 Coils Coil 16 48 - -
Mepo6g00015 815 SMART rrm2_1 251 317 IPR003954 GO:0003676
Mepo6g00015 815 Coils Coil 82 115 - -
Mepo6g00015 815 Coils Coil 57 77 - -
Mepo6g00015 815 MobiDBLite consensus disorder prediction 84 104 - -
Mepo6g00015 815 MobiDBLite consensus disorder prediction 84 123 - -
Mepo6g00015 815 MobiDBLite consensus disorder prediction 408 441 - -
Mepo6g00015 815 ProSiteProfiles Zinc finger C3H1-type profile. 189 217 IPR000571 GO:0046872
Mepo6g00015 815 MobiDBLite consensus disorder prediction 636 681 - -
Mepo6g00015 815 MobiDBLite consensus disorder prediction 153 178 - -
Mepo6g00015 815 MobiDBLite consensus disorder prediction 555 597 - -
Mepo6g00015 815 MobiDBLite consensus disorder prediction 717 815 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mepo6g00015 zf-CCCH 2.1e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g00015 K24273 - cam:101495256 832.402