Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g00007 ATGGCTTCAAATCACATGTCAGCTGTTACAAGCCGTTCAGGGTCAACTAATGATGCTTTATACAAGGAATTGTGGCATGCCTGTGCTGGACCCCTTGTCACTCTTCCCCGTGAAGGGGAGAGAGTGTATTACTTCCCTCAAGGTCACATGGAACAGCTCGAGGCATCTATGAATCAGGGATTAGAGCAGCAAATGCCTTCCTTTAATCTGCCCTCTAAAATATTATGTAAAGTGGTCAATATTCATCTTCGGGCTGAACCTGAAACAGATGAAGTATATGCACAGATAACTCTGCTACCTGAGACCGATCAAAGTGAGGTGACAAGCCCAGATGATCCTCTGCCTGAACCTCCAAGGTGTACAGTTCATTCATTTTGCAAGACACTTACGGCTTCTGACACTAGCACTCACGGAGGTTTCTCTGTTCTTCGAAGACATGCAGATGATTGTCTACCACCATTGGACATGACTCAGCAGCCACCATGGCAAGAACTGGTTGCAACTGATTTGCATGGAAATGAGTGGCATTTTCGACATATTTTTCGCGGACAACCCAGGCGCCACTTACTAACCACTGGGTGGAGTGTCTTTGTCAGTTCCAAAAAATTAGTGGCTGGCGACGCATTTATATTCTTAAGGGGTGAAAATGGAGAGCTCCGAGTTGGAGTCAGGAGGCTCATGAGACAGCAAAGCAATATGCCATCTTCTGTCATATCTAGTCACAGCATGCATCTTGGTGTTTTGGCCACTGCATCTCATGCGATTTCCACCGGAACATTGTTTTCTGTGTTTTACAAGCCCAGAACAAGCCGGTCAGAGTTTATTGTAAGTATTAACAAGTATCTTGAAGCTCGAAATCACAAACTTTCTGTTGGGATGCGATTCAAAATGAGGTTCGAGGGTGATGAAGTACCGGAAAGAAGGTTCAGTGGTACAATTGTGGGTGTTGAAGATAATAAATCATCTGTCTGGGCTGATTCCGAGTGGCGATCATTAAAGGTTCAATGGGATGAACCGTCATCGATTTTGCGTCCAGATAGAGTTTCTCCATGGGAATTGGAGCCACTTGTATCTACCCCTCCAGCAAACTCCCAGCCAACCCAACGAAACAAGAGATCACGGCCTCCTATGCTACCATCAACAATGACTGATTCTTCTCTGCAAGGCATATGGAAATCACCAGTTGACTCTCCACCTTTCCCTTATCGTGACCCTCAACATGGAAGAGACCTCTATCCATCACCAAGATTCAGCTGTACTGCGACTAGCTTTCTTGGTTTTGGTGGGAACAGCCCTGCTTCTAACAAGTCAATGTATTGGTCTAGTAGATTGGAAAACTCTACAGAACCTTTTTCACCTGTAGCACTTAAAGAATCTGGAGAGAAGAGACAAGGCACTGGAAATGGCTGTAGGCTCTTTGGGATTCAGTTACTTGAGAATTCTAATGCAGAAGAAAGTCTGCAAACTGCTCCTTTGTCAGGAAGGGTGGGGGATGATAGGTCAGTTCCGTCCTTGGATGCCGAGTCTGACCAACATTCTGAACCATCAAATGTTAATCGGTCTGATATTCCTTCAGTAAGTTGTGATGCTGACAAATCATGCCTGCGGTCTCCTCAGGAGTCACAAAGCAGACAAATAAGAAGCTGCACAAAGGTTCACATGCAAGGTATGGCTGTTGGAAGGGCTGTTGATTTAACACGTTTTGATGGATATGAGGATCTGCTTAGGAAATTGGAAGAGATGTTTGACATTGAGGGTGAGCTCTGTGGAGCAACAAAAAAATGGCTGGTAGTTTACACTGACAATGAAGATGATATGATGATGGTTGGGGATGATCCGTGGCTTGAATTTTGTAGCGTTGTGAGGAAAATGTTCATCTACACACCAGAGGAGGTGAAGAAGCTTTCACCGAAAATAGGTCTTCCGAGCAATGAAGAAGGTAAACCAAGCAAACTGGATTCCGAAGCAGTTGTCAATCCTGAGGACCGGTCATCTATTGTGGGGCCTGGTTGCTAA 2016 0.4504 MASNHMSAVTSRSGSTNDALYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMNQGLEQQMPSFNLPSKILCKVVNIHLRAEPETDEVYAQITLLPETDQSEVTSPDDPLPEPPRCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMTQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQSNMPSSVISSHSMHLGVLATASHAISTGTLFSVFYKPRTSRSEFIVSINKYLEARNHKLSVGMRFKMRFEGDEVPERRFSGTIVGVEDNKSSVWADSEWRSLKVQWDEPSSILRPDRVSPWELEPLVSTPPANSQPTQRNKRSRPPMLPSTMTDSSLQGIWKSPVDSPPFPYRDPQHGRDLYPSPRFSCTATSFLGFGGNSPASNKSMYWSSRLENSTEPFSPVALKESGEKRQGTGNGCRLFGIQLLENSNAEESLQTAPLSGRVGDDRSVPSLDAESDQHSEPSNVNRSDIPSVSCDADKSCLRSPQESQSRQIRSCTKVHMQGMAVGRAVDLTRFDGYEDLLRKLEEMFDIEGELCGATKKWLVVYTDNEDDMMMVGDDPWLEFCSVVRKMFIYTPEEVKKLSPKIGLPSNEEGKPSKLDSEAVVNPEDRSSIVGPGC 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g00007 671 CDD B3_DNA 123 225 IPR003340 GO:0003677
Mepo6g00007 671 SMART B3_2 125 227 IPR003340 GO:0003677
Mepo6g00007 671 MobiDBLite consensus disorder prediction 637 671 - -
Mepo6g00007 671 MobiDBLite consensus disorder prediction 508 524 - -
Mepo6g00007 671 Pfam AUX/IAA family 544 637 IPR033389 -
Mepo6g00007 671 ProSiteProfiles PB1 domain profile. 547 640 IPR000270 GO:0005515
Mepo6g00007 671 Gene3D - 542 636 - -
Mepo6g00007 671 FunFam Auxin response factor 288 360 - -
Mepo6g00007 671 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 636 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mepo6g00007 671 SUPERFAMILY CAD & PB1 domains 549 624 - -
Mepo6g00007 671 ProSiteProfiles B3 DNA-binding domain profile. 125 227 IPR003340 GO:0003677
Mepo6g00007 671 Pfam Auxin response factor 251 333 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mepo6g00007 671 MobiDBLite consensus disorder prediction 354 408 - -
Mepo6g00007 671 MobiDBLite consensus disorder prediction 358 392 - -
Mepo6g00007 671 Gene3D - 288 360 - -
Mepo6g00007 671 FunFam Auxin response factor 123 227 - -
Mepo6g00007 671 Gene3D - 122 227 IPR015300 -
Mepo6g00007 671 Pfam B3 DNA binding domain 125 225 IPR003340 GO:0003677
Mepo6g00007 671 SUPERFAMILY DNA-binding pseudobarrel domain 114 254 IPR015300 -
Mepo6g00007 671 FunFam Auxin response factor 542 636 - -
Mepo6g00007 671 MobiDBLite consensus disorder prediction 484 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g00007 Mepo-Chr6 149948 162008 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g00007 2 665 B3 DNA Binding Superfamily AT1G59750 72.156 0.0 956
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mepo6g00007 AUX_IAA 6.9e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g00007 K14486 - gmx:100793224 1233.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g00007 6 149948 162008 Mepo6g00007 6 149948 162008 ECH