Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g04403 ATGGTATCCAAAAACCCGAACCCGCCAGAAGGTTTCTGCCTGGATCCGACCAGCATGGCTCTACCGGGTTTCGGCCCCTTCGCCGCCGTGAACTCGTCGGAAGACGCCTCCAAGAAGATCAGGAAGCCGTACACGATAACCAAGTCTAGAGAAAATTGGACTGAACCTGAACATGACAAGTTTCTCGAAGCTCTTCAATTGTTTGACCGTGATTGGAAAAAGATTGAAGCATTTGTTGGATCAAAGACTGTTATACAGATACGTAGCCATGCACAAAAATACTTTCTAAAAGTTCAGAAGAGTGGAGCCAATGAACATCTACCTCCGCCCAGACCTAAAAGAAAAGCTGCCCATCCCTATCCTCAAAAAGCTTCCAAAAGTGCTCCTGTACTCGGGCAATTACCAGGATCTTTTCAATCTTCACCGGCTTTGCTTGAACCTGGATATATAATGAAAAATGAATCCATACCAATGCTTGAAACTCCAATTATGAACACTGTGGTGTCTTCCTGGTCAAACCACACGTTGCAAAACACCAATTTGTTACATGTGCCAAAGGTGAATAATTCTTGCAGTAGCACTGAAAGTACTCCAAAAGTGCGGCCGGTTGGTGAATCTAATAATCAAGTGAATAAAAGCCTTCCTTTGAGAGTTCTTCCAGATTTTTCTCAAGTATACAACTTCATTGGAAGTGTATTTGACCCAGAAGCATCTGAGCATTTACAGAAACTCAAACAGATGGACCGTATAGATGTTGAGACGGTGCTTCTGTTGATGAGAAACCTGTCAATCAATTTAACTAGCCCAGATTTTGAGGATCACAAAAAGCTGCTTTCATCCTATGAAGTTGATCTAGAGACAAACAGCTATCTCAATCCAGATAGACCGATACACGACGAGCCATTGAAGAGTGCTACTACTTAA 924 0.4275 MVSKNPNPPEGFCLDPTSMALPGFGPFAAVNSSEDASKKIRKPYTITKSRENWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKSGANEHLPPPRPKRKAAHPYPQKASKSAPVLGQLPGSFQSSPALLEPGYIMKNESIPMLETPIMNTVVSSWSNHTLQNTNLLHVPKVNNSCSSTESTPKVRPVGESNNQVNKSLPLRVLPDFSQVYNFIGSVFDPEASEHLQKLKQMDRIDVETVLLLMRNLSINLTSPDFEDHKKLLSSYEVDLETNSYLNPDRPIHDEPLKSATT 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g04403 307 ProSiteProfiles SANT domain profile. 48 99 IPR017884 -
Mepo5g04403 307 FunFam protein REVEILLE 6 isoform X1 52 100 - -
Mepo5g04403 307 CDD SANT 52 95 IPR001005 -
Mepo5g04403 307 SMART sant 49 97 IPR001005 -
Mepo5g04403 307 MobiDBLite consensus disorder prediction 100 134 - -
Mepo5g04403 307 NCBIfam myb-like DNA-binding domain, SHAQKYF class 48 97 IPR006447 GO:0003677
Mepo5g04403 307 SUPERFAMILY Homeodomain-like 44 100 IPR009057 -
Mepo5g04403 307 ProSiteProfiles Myb-like domain profile. 45 95 IPR001005 -
Mepo5g04403 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 45 99 IPR017930 -
Mepo5g04403 307 Gene3D - 52 100 - -
Mepo5g04403 307 PANTHER SWI/SNF COMPLEX-RELATED 34 267 - -
Mepo5g04403 307 MobiDBLite consensus disorder prediction 187 208 - -
Mepo5g04403 307 Pfam Myb-like DNA-binding domain 50 95 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g04403 Mepo-Chr5 57580766 57588973 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mepo5g04403 Myb_DNA-binding 4e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g04403 - - gmx:778054 463.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g04403 5 57580766 57588973 Mepo5g04403 5 57580766 57588973 ECH