Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mepo5g04353 | ATGTCAACAACTTTCATAGAATTTACAATTGATGAGCTTGACGGTCTTGTGGCGGTCTCCAAAACGCCGTTATACAAGTTTGTTTCGTGGAAGAGCTTTGTCGAAAACTTACCGGAGGTTGTGGATTTCACTAAGGATGATGTTTGCTCTATTTGCATGGAAGACTTTGAAGAATCACACAATTCAAAAGGAGGAGGAAACAGTTTGTTTAGGGTTTCAAACAGACGAGTTCCTTGTGGTCATGTGTACCACTCAAACTGCATCACTGAATGGCTCCATCGCTGCAACTCTTGCCCTCTTTGCCGCCACCATATCTCCCGTTAG | 324 | 0.4352 | MSTTFIEFTIDELDGLVAVSKTPLYKFVSWKSFVENLPEVVDFTKDDVCSICMEDFEESHNSKGGGNSLFRVSNRRVPCGHVYHSNCITEWLHRCNSCPLCRHHISR | 107 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mepo5g04353 | 107 | ProSiteProfiles | Zinc finger RING-type profile. | 49 | 102 | IPR001841 | - | |
Mepo5g04353 | 107 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 31 | 105 | - | - | |
Mepo5g04353 | 107 | SUPERFAMILY | RING/U-box | 32 | 105 | - | - | |
Mepo5g04353 | 107 | Pfam | Ring finger domain | 48 | 102 | IPR001841 | - | |
Mepo5g04353 | 107 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 26 | 107 | IPR013083 | - | |
Mepo5g04353 | 107 | SMART | ring_2 | 49 | 101 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mepo5g04353 | Mepo-Chr5 | 56795920 | 56796261 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mepo5g04353 | 9 | 105 | C3H Transcription Factor Family | AT3G30460 | 34.615 | 5.93e-11 | 54.7 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mepo5g04353 | K22378 | - | gmx:102669154 | 120.168 |