Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g04353 ATGTCAACAACTTTCATAGAATTTACAATTGATGAGCTTGACGGTCTTGTGGCGGTCTCCAAAACGCCGTTATACAAGTTTGTTTCGTGGAAGAGCTTTGTCGAAAACTTACCGGAGGTTGTGGATTTCACTAAGGATGATGTTTGCTCTATTTGCATGGAAGACTTTGAAGAATCACACAATTCAAAAGGAGGAGGAAACAGTTTGTTTAGGGTTTCAAACAGACGAGTTCCTTGTGGTCATGTGTACCACTCAAACTGCATCACTGAATGGCTCCATCGCTGCAACTCTTGCCCTCTTTGCCGCCACCATATCTCCCGTTAG 324 0.4352 MSTTFIEFTIDELDGLVAVSKTPLYKFVSWKSFVENLPEVVDFTKDDVCSICMEDFEESHNSKGGGNSLFRVSNRRVPCGHVYHSNCITEWLHRCNSCPLCRHHISR 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g04353 107 ProSiteProfiles Zinc finger RING-type profile. 49 102 IPR001841 -
Mepo5g04353 107 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 31 105 - -
Mepo5g04353 107 SUPERFAMILY RING/U-box 32 105 - -
Mepo5g04353 107 Pfam Ring finger domain 48 102 IPR001841 -
Mepo5g04353 107 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 107 IPR013083 -
Mepo5g04353 107 SMART ring_2 49 101 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g04353 Mepo-Chr5 56795920 56796261 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g04353 9 105 C3H Transcription Factor Family AT3G30460 34.615 5.93e-11 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g04353 K22378 - gmx:102669154 120.168